BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0534600 Os04g0534600|AK073835
(222 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G47430.1 | chr3:17480798-17481692 FORWARD LENGTH=228 276 6e-75
AT1G47750.1 | chr1:17569388-17570134 REVERSE LENGTH=249 97 5e-21
AT2G45740.1 | chr2:18839865-18841102 FORWARD LENGTH=237 54 7e-08
AT1G01820.1 | chr1:296213-297723 REVERSE LENGTH=236 51 5e-07
AT3G61070.1 | chr3:22604873-22606159 REVERSE LENGTH=232 50 1e-06
>AT3G47430.1 | chr3:17480798-17481692 FORWARD LENGTH=228
Length = 227
Score = 276 bits (706), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 147/224 (65%), Positives = 168/224 (75%), Gaps = 6/224 (2%)
Query: 5 DTLDKLVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFR 64
DT+DKLVVFLAKRDGIDKLVKTFQYV+KLA W E++ P A R K WE ++GLSRKAFR
Sbjct: 4 DTVDKLVVFLAKRDGIDKLVKTFQYVAKLACWHVEATRPEAADRFKKWEVASGLSRKAFR 63
Query: 65 TGRFLTGLNGLRRAPGEFGA---LAVLANAGEMVYFFFDHFTWLSRVGVLDAWLARRMSF 121
TGR LTG N LRR PG LAVLAN+GEMVYFFFDHF WLSR+G +DA LA++MSF
Sbjct: 64 TGRSLTGFNALRRNPGATPMIRFLAVLANSGEMVYFFFDHFLWLSRIGSIDAKLAKKMSF 123
Query: 122 ISAFGESVGYVFFIAMDLIMIRRGLRQERKLLRXXXXXXX---XXXXXIRMDRVMRLMAT 178
ISAFGES GY FFI +D I I++ L+ +KL IR D VMRLM
Sbjct: 124 ISAFGESFGYTFFIIIDCIFIKQRLKSLKKLQHSTDEPKEEIGAKISEIRGDIVMRLMGI 183
Query: 179 AANVADLVIGIADIEPNPFCNHAVTLGISGLVSAWAGWYRNWPS 222
+ANVADL+I +A+I PNPFCNH +TLGISGLVSAWAGWYRNWPS
Sbjct: 184 SANVADLLIALAEIHPNPFCNHTITLGISGLVSAWAGWYRNWPS 227
>AT1G47750.1 | chr1:17569388-17570134 REVERSE LENGTH=249
Length = 248
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 123/234 (52%), Gaps = 18/234 (7%)
Query: 5 DTLDKLVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSP---GLAGRAKNWETSAGLSRK 61
D L+ L +L+KRDG+DKL+K +Y +K+ A S P + R K++E+S G+SRK
Sbjct: 16 DFLNHLETYLSKRDGVDKLLKISRYATKII--LASSLIPETRSIIPRLKSFESSVGVSRK 73
Query: 62 AFRTGRFLTGLNGLRRA---PGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLDAWLARR 118
AFR G+F+ +N LR + L ++A GE +Y+F + F WL++ G++DA ++
Sbjct: 74 AFRLGKFVQDINALRSSRWDSNHELVLLIIAYGGEGLYYFVEQFIWLTKSGLIDAKHSKW 133
Query: 119 MSFISAFGESVGYVFFIAMDLIMIRRGLRQERKLLRXXXXXXXXXXXXIRMD-------- 170
+ ISA+ E VGYV +++ + +R+ +E + D
Sbjct: 134 LQKISAWAELVGYVGSVSIKIRDLRKLNDEESCVASTIEISVSRGLACDGEDEKMKMIKE 193
Query: 171 -RVMRLMATAANVADLVIGIADI-EPNPFCNHAVTLGISGLVSAWAGWYRNWPS 222
+ +++++ ++AD ++ IADI + + + +GL SA ++NW S
Sbjct: 194 KKTLKVLSILQDLADGLMTIADIRDGKGVLSAPNVISSAGLFSAIVSTHKNWIS 247
>AT2G45740.1 | chr2:18839865-18841102 FORWARD LENGTH=237
Length = 236
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 23/158 (14%)
Query: 10 LVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFL 69
+V++L K + DKL + QY SK S G G A+N + S L+RK FR +F+
Sbjct: 15 VVMYLNKAEARDKLCRAIQYGSKFL-------SGGQPGTAQNVDKSTSLARKVFRLFKFV 67
Query: 70 TGLNGL-----RRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLD----AWLARRMS 120
L+GL + P L NA + F D WL R G+ A L R+S
Sbjct: 68 NDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAELLGRIS 127
Query: 121 FISAFGES-------VGYVFFIAMDLIMIRRGLRQERK 151
G S VG + ++ + I +GL+ K
Sbjct: 128 LFCWMGSSVCTTLVEVGEMGRLSSSMKKIEKGLKNGNK 165
>AT1G01820.1 | chr1:296213-297723 REVERSE LENGTH=236
Length = 235
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 16/129 (12%)
Query: 10 LVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFL 69
+VV+L K + DK+ + QY SK S G G A+N + + L+RK FR +F+
Sbjct: 14 VVVYLNKAEARDKICRAIQYGSKFL-------SDGQPGTAQNVDKNTSLARKVFRLFKFV 66
Query: 70 TGLNGL-----RRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLD----AWLARRMS 120
L+ L + P L NA + F D WL R G+ A + R+S
Sbjct: 67 NDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAEILGRIS 126
Query: 121 FISAFGESV 129
G SV
Sbjct: 127 LFCWMGSSV 135
>AT3G61070.1 | chr3:22604873-22606159 REVERSE LENGTH=232
Length = 231
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 34/229 (14%)
Query: 10 LVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFL 69
+V++L K + DK+ + QY SK S G G A+ + + L+RK FR +F+
Sbjct: 14 IVLYLNKAEARDKICRAIQYGSKFL-------SGGQPGTAQTVDKNTSLARKVFRLFKFV 66
Query: 70 TGLNGL-----RRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLD----AWLARRMS 120
+GL + P L NA + F D WL R G+ L R+S
Sbjct: 67 NDFHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERTELLGRIS 126
Query: 121 FISAFGESV-------GYVFFIAMDLIMIRRGLRQERKLLRXXXXXXXXXXXXIRMDRVM 173
G SV G + ++ + + + L+ + +L R DR +
Sbjct: 127 LFCWLGSSVCTSAVEIGELGRLSSSMKKMEKELKADDELYRAKLQKSN--------DRTL 178
Query: 174 RLMATAANVADLVIGIADIEPNPFCNHAVTLGISGLVSAWAGWYRNWPS 222
L+ ++ D+++ I ++ P G G ++ Y+ PS
Sbjct: 179 ALIKSS---MDIIVAIGLLQLAPKTISPRVTGAFGFTTSLISCYQLLPS 224
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.138 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,154,411
Number of extensions: 140728
Number of successful extensions: 347
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 5
Length of query: 222
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 127
Effective length of database: 8,502,049
Effective search space: 1079760223
Effective search space used: 1079760223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 110 (47.0 bits)