Os03g0302000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peroxisomal biogenesis factor 11 family protein.
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Os03g0302000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peroxisomal biogenesis factor 11 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 200.97 | 0.666 | 5.79 | 0.323 | 1.09 | 1.28 | 0.0879 | 0.948 | -0.237 | 12 | 68.01 | 6073 | -- | -- |
| 201.34 | 0.661 | 5.75 | 0.364 | 1.07 | 1.34 | 0.082 | -- | -0.116 | 12 | 67 | 6108 | -- | -- |
| 200.1 | 0.659 | 5.78 | 0.337 | 1.11 | 1.29 | -- | 0.948 | -0.161 | 12.1 | 66 | 5991 | -- | -- |
| 201.21 | 0.661 | 5.76 | 0.358 | 1.07 | 1.33 | -- | -- | -0.117 | 12.2 | 67 | 5992 | -- | -- |
| 274.65 | 0.772 | 5.78 | 0.324 | -- | 1.39 | -- | 0.508 | -0.123 | -- | 66.17 | 6006 | -- | -- |
| 226.59 | 0.706 | 5.76 | 0.221 | 1.1 | -- | -0.0149 | -- | -0.161 | 12.2 | -- | -- | -- | -- |
| 226.59 | 0.705 | 5.76 | 0.221 | 1.1 | -- | -- | -- | -0.161 | 12.2 | -- | -- | -- | -- |
| 275 | 0.772 | 5.77 | 0.324 | -- | 1.41 | -- | -- | -0.116 | -- | 66.25 | 6001 | -- | -- |
| 204.38 | 0.666 | 5.75 | -- | 1.07 | 1.29 | -- | -- | -0.136 | 12.1 | 66.8 | 5991 | -- | -- |
| 303.39 | 0.814 | 5.79 | 0.185 | -- | -- | -- | -- | -0.177 | -- | -- | -- | -- | -- |
| 227.87 | 0.706 | 5.77 | -- | 1.1 | -- | -- | -- | -0.185 | 12.2 | -- | -- | -- | -- |
| 277.73 | 0.776 | 5.78 | -- | -- | 1.35 | -- | -- | -0.146 | -- | 67 | 6001 | -- | -- |
| 304.29 | 0.814 | 5.79 | -- | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 196.52 | humidity | 60 | 14400 | < th | dose dependent | rect. | 14 | 21 |
| 4 | 197.22 | humidity | 60 | 14400 | > th | dose independent | rect. | 15 | 20 |
| 7 | 197.25 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 8 | 197.39 | humidity | 60 | 14400 | < th | dose independent | sin | 10 | NA |
| 11 | 197.48 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 16 | 197.54 | humidity | 90 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 18 | 197.62 | humidity | 50 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 21 | 197.65 | humidity | 80 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 22 | 197.66 | humidity | 60 | 14400 | > th | dose independent | sin | 10 | NA |
| 26 | 197.68 | humidity | 60 | 14400 | < th | dose dependent | sin | 18 | NA |
| 30 | 197.74 | humidity | 60 | 14400 | < th | dose dependent | rect. | 13 | 4 |
| 34 | 197.81 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 6 |
| 37 | 197.84 | humidity | 60 | 14400 | < th | dose dependent | sin | 11 | NA |
| 41 | 197.89 | humidity | 60 | 14400 | < th | dose dependent | rect. | 10 | 8 |
| 43 | 197.90 | radiation | 40 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 66 | 197.95 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 22 |
| 67 | 197.96 | humidity | 60 | 14400 | < th | dose dependent | rect. | 7 | 11 |
| 78 | 197.96 | humidity | 60 | 14400 | < th | dose dependent | rect. | 10 | 22 |
| 85 | 198.00 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 9 |
| 89 | 198.00 | humidity | 60 | 14400 | < th | dose dependent | rect. | 9 | 12 |
| 138 | 198.06 | humidity | 60 | 14400 | < th | dose dependent | no | NA | NA |
| 283 | 198.41 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 285 | 198.42 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 311 | 198.61 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 312 | 198.61 | humidity | 60 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 321 | 198.73 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 15 |
| 326 | 198.76 | wind | 3 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 339 | 198.99 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 350 | 199.12 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 17 |
| 355 | 199.18 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 371 | 199.27 | humidity | 70 | 14400 | < th | dose dependent | rect. | 20 | 15 |
| 398 | 199.43 | humidity | 50 | 4320 | > th | dose dependent | rect. | 5 | 7 |
| 405 | 199.48 | humidity | 70 | 14400 | < th | dose dependent | rect. | 6 | 5 |
| 419 | 199.57 | humidity | 90 | 4320 | < th | dose dependent | rect. | 5 | 7 |
| 423 | 199.61 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 427 | 199.63 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 453 | 199.67 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 461 | 199.69 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 16 |
| 463 | 199.70 | humidity | 60 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 474 | 199.78 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 9 |
| 476 | 199.78 | humidity | 60 | 14400 | > th | dose independent | rect. | 1 | 11 |
| 477 | 199.78 | humidity | 60 | 14400 | > th | dose independent | rect. | 23 | 13 |
| 488 | 199.81 | humidity | 60 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 490 | 199.81 | humidity | 60 | 14400 | > th | dose independent | rect. | 15 | 14 |
| 507 | 199.83 | humidity | 60 | 14400 | > th | dose independent | rect. | 15 | 7 |
| 519 | 199.86 | humidity | 60 | 14400 | < th | dose independent | no | NA | NA |
| 566 | 199.87 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 776 | 200.56 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 808 | 200.68 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 813 | 200.71 | humidity | 60 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 880 | 200.87 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 894 | 200.94 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 897 | 200.97 | humidity | 80 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 907 | 201.00 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 7 |
| 914 | 201.02 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 922 | 201.07 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 22 |
| 932 | 201.11 | humidity | 60 | 14400 | > th | dose independent | rect. | 4 | 14 |
| 938 | 201.12 | humidity | 60 | 14400 | > th | dose independent | rect. | 6 | 12 |