BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0302000 Os03g0302000|Os03g0302000
         (242 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0302000  Peroxisomal biogenesis factor 11 family protein     311   4e-85
Os03g0301950  Peroxisomal biogenesis factor 11 family protein     207   6e-54
Os04g0534600  Peroxisomal biogenesis factor 11 family protein      87   1e-17

>Os03g0302000 Peroxisomal biogenesis factor 11 family protein
          Length = 242

 Score =  311 bits (796), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 163/234 (69%), Positives = 163/234 (69%)

Query: 9   GSSDSRKPAAHPPPRDFLVHVEAYLSRRDGVDKLLKISXXXXXXXXXXXXXXXXXXXXXK 68
           GSSDSRKPAAHPPPRDFLVHVEAYLSRRDGVDKLLKIS                     K
Sbjct: 9   GSSDSRKPAAHPPPRDFLVHVEAYLSRRDGVDKLLKISRYAARLALAAGPLPPAASARLK 68

Query: 69  SFESSVGLSRKAFRLGKFVQNVNXXXXXXXXXXXXXXXXYGGEGVYYFLEQFVWLAKAGL 128
           SFESSVGLSRKAFRLGKFVQNVN                YGGEGVYYFLEQFVWLAKAGL
Sbjct: 69  SFESSVGLSRKAFRLGKFVQNVNALRAHPHPPPAVALLAYGGEGVYYFLEQFVWLAKAGL 128

Query: 129 LPAHLLPRLQRLSAWAELLGYVGSITIKLEEIGKLESSVKMRLKEGCREESDXXXXXXXX 188
           LPAHLLPRLQRLSAWAELLGYVGSITIKLEEIGKLESSVKMRLKEGCREESD        
Sbjct: 129 LPAHLLPRLQRLSAWAELLGYVGSITIKLEEIGKLESSVKMRLKEGCREESDVVRTLRVK 188

Query: 189 XXXXXMSVVQDVADAVMALGDVTDGKXXXXXXXXXXXXXXXXXXXXXHKNWNSC 242
                MSVVQDVADAVMALGDVTDGK                     HKNWNSC
Sbjct: 189 LLLKRMSVVQDVADAVMALGDVTDGKGLLGSSTLMASAGLLSALISAHKNWNSC 242



>Os03g0301950 Peroxisomal biogenesis factor 11 family protein
          Length = 254

 Score =  207 bits (527), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 117/241 (48%), Positives = 136/241 (56%), Gaps = 12/241 (4%)

Query: 14  RKPAAHP--PPRDFLVHVEAYLSRRDGVDKLLKISXXXXXXXXXXXXXX----XXXXXXX 67
           RKPA+ P  P RD LVH+EAYLSRRDGVD LLK+S                         
Sbjct: 14  RKPASRPRLPCRDILVHIEAYLSRRDGVDNLLKVSLYAARLALALAAGQPPLPHAATARL 73

Query: 68  KSFESSVGLSRKAFRLGKFVQNVNXXXXXX-----XXXXXXXXXXYGGEGVYYFLEQFVW 122
           +SFESSVGLSRKAFRLGKFVQ++N                     YGG+GVY FLEQF W
Sbjct: 74  RSFESSVGLSRKAFRLGKFVQSINALRAAAYHPHPHVHPLLVLLAYGGQGVYNFLEQFAW 133

Query: 123 LAKAGLLPAHLLPR-LQRLSAWAELLGYVGSITIKLEEIGKLESSVKMRLKEGCREESDX 181
           LAKAGLLPA LLPR L R+  WA+LL +VGSI IKLEE+ +LE  V+ RL+EGC EES+ 
Sbjct: 134 LAKAGLLPARLLPRRLHRIGVWAQLLAHVGSIAIKLEEVAELECGVEARLEEGCGEESEV 193

Query: 182 XXXXXXXXXXXXMSVVQDVADAVMALGDVTDGKXXXXXXXXXXXXXXXXXXXXXHKNWNS 241
                       MS+VQD+ D+ M +GDVT  K                     HKNWNS
Sbjct: 194 VRTLSRKLLLKLMSLVQDMVDSAMTVGDVTGRKGLLGSSTLMASAGLLSALISVHKNWNS 253

Query: 242 C 242
           C
Sbjct: 254 C 254



>Os04g0534600 Peroxisomal biogenesis factor 11 family protein
          Length = 222

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 1/188 (0%)

Query: 24  DFLVHVEAYLSRRDGVDKLLK-ISXXXXXXXXXXXXXXXXXXXXXKSFESSVGLSRKAFR 82
           D L  +  +L++RDG+DKL+K                        K++E+S GLSRKAFR
Sbjct: 5   DTLDKLVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFR 64

Query: 83  LGKFVQNVNXXXXXXXXXXXXXXXXYGGEGVYYFLEQFVWLAKAGLLPAHLLPRLQRLSA 142
            G+F+  +N                  GE VY+F + F WL++ G+L A L  R+  +SA
Sbjct: 65  TGRFLTGLNGLRRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLDAWLARRMSFISA 124

Query: 143 WAELLGYVGSITIKLEEIGKLESSVKMRLKEGCREESDXXXXXXXXXXXXXMSVVQDVAD 202
           + E +GYV  I + L  I +     +  L+EG +++               M+   +VAD
Sbjct: 125 FGESVGYVFFIAMDLIMIRRGLRQERKLLREGGKDKDKEVKKIRMDRVMRLMATAANVAD 184

Query: 203 AVMALGDV 210
            V+ + D+
Sbjct: 185 LVIGIADI 192



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,656,637
Number of extensions: 158730
Number of successful extensions: 329
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 3
Length of query: 242
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 144
Effective length of database: 11,918,829
Effective search space: 1716311376
Effective search space used: 1716311376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)