BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0302000 Os03g0302000|Os03g0302000
(242 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G47750.1 | chr1:17569388-17570134 REVERSE LENGTH=249 169 2e-42
AT3G47430.1 | chr3:17480798-17481692 FORWARD LENGTH=228 58 4e-09
>AT1G47750.1 | chr1:17569388-17570134 REVERSE LENGTH=249
Length = 248
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 127/237 (53%), Gaps = 14/237 (5%)
Query: 20 PPPRDFLVHVEAYLSRRDGVDKLLKISXXXXXXXXXXXXXXXXXXXX--XKSFESSVGLS 77
P RDFL H+E YLS+RDGVDKLLKIS KSFESSVG+S
Sbjct: 12 PKDRDFLNHLETYLSKRDGVDKLLKISRYATKIILASSLIPETRSIIPRLKSFESSVGVS 71
Query: 78 RKAFRLGKFVQNVNXXXXX---XXXXXXXXXXXYGGEGVYYFLEQFVWLAKAGLLPAHLL 134
RKAFRLGKFVQ++N YGGEG+YYF+EQF+WL K+GL+ A
Sbjct: 72 RKAFRLGKFVQDINALRSSRWDSNHELVLLIIAYGGEGLYYFVEQFIWLTKSGLIDAKHS 131
Query: 135 PRLQRLSAWAELLGYVGSITIKLEEIGKLE-------SSVKMRLKEG--CREESDXXXXX 185
LQ++SAWAEL+GYVGS++IK+ ++ KL S++++ + G C E +
Sbjct: 132 KWLQKISAWAELVGYVGSVSIKIRDLRKLNDEESCVASTIEISVSRGLACDGEDEKMKMI 191
Query: 186 XXXXXXXXMSVVQDVADAVMALGDVTDGKXXXXXXXXXXXXXXXXXXXXXHKNWNSC 242
+S++QD+AD +M + D+ DGK HKNW SC
Sbjct: 192 KEKKTLKVLSILQDLADGLMTIADIRDGKGVLSAPNVISSAGLFSAIVSTHKNWISC 248
>AT3G47430.1 | chr3:17480798-17481692 FORWARD LENGTH=228
Length = 227
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 79/190 (41%), Gaps = 15/190 (7%)
Query: 32 YLSRRDGVDKLLK-ISXXXXXXXXXXXXXXXXXXXXXKSFESSVGLSRKAFRLGKFVQNV 90
+L++RDG+DKL+K K +E + GLSRKAFR G+ +
Sbjct: 12 FLAKRDGIDKLVKTFQYVAKLACWHVEATRPEAADRFKKWEVASGLSRKAFRTGRSLTGF 71
Query: 91 NXXXX---XXXXXXXXXXXXYGGEGVYYFLEQFVWLAKAGLLPAHLLPRLQRLSAWAELL 147
N GE VY+F + F+WL++ G + A L ++ +SA+ E
Sbjct: 72 NALRRNPGATPMIRFLAVLANSGEMVYFFFDHFLWLSRIGSIDAKLAKKMSFISAFGESF 131
Query: 148 GYVGSITI-------KLEEIGKLESSVKMRLKEGCREESDXXXXXXXXXXXXXMSVVQDV 200
GY I I +L+ + KL+ S E E M + +V
Sbjct: 132 GYTFFIIIDCIFIKQRLKSLKKLQHST----DEPKEEIGAKISEIRGDIVMRLMGISANV 187
Query: 201 ADAVMALGDV 210
AD ++AL ++
Sbjct: 188 ADLLIALAEI 197
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,492,964
Number of extensions: 98189
Number of successful extensions: 183
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 2
Length of query: 242
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 146
Effective length of database: 8,474,633
Effective search space: 1237296418
Effective search space used: 1237296418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)