BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0529600 Os04g0529600|Os04g0529600
         (422 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0529600  Lanthionine synthetase C-like family protein        773   0.0  
Os10g0497900  Lanthionine synthetase C-like family protein        471   e-133

>Os04g0529600 Lanthionine synthetase C-like family protein
          Length = 422

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/422 (89%), Positives = 379/422 (89%)

Query: 1   MADRFFPNNMPGYADEGXXXXXXXXXXXXIPSTYXXXXXXXXXXPYPDLADRFLHAALHL 60
           MADRFFPNNMPGYADEG            IPSTY          PYPDLADRFLHAALHL
Sbjct: 1   MADRFFPNNMPGYADEGAPPPPAAAAAAAIPSTYSSSLHHLLSLPYPDLADRFLHAALHL 60

Query: 61  KQKVVHETWDKXXXXXXXXGEAVGDFXXXXXXXXXXXXXFRAYLVTGDRADLATCAEIVA 120
           KQKVVHETWDK        GEAVGDF             FRAYLVTGDRADLATCAEIVA
Sbjct: 61  KQKVVHETWDKRRRAAAAAGEAVGDFTLYTGALGTALLLFRAYLVTGDRADLATCAEIVA 120

Query: 121 ACDAASMGAEIATFICGRAGVCALGAVVAKHAGDEAGVAHYLSAFKEIKIHSKSPDELLY 180
           ACDAASMGAEIATFICGRAGVCALGAVVAKHAGDEAGVAHYLSAFKEIKIHSKSPDELLY
Sbjct: 121 ACDAASMGAEIATFICGRAGVCALGAVVAKHAGDEAGVAHYLSAFKEIKIHSKSPDELLY 180

Query: 181 GRAGYLWACTFLNKHLGDNTIPPTTTDTVMRDIIRDGRTLSTIGCPLMYEWYGEKYWGAA 240
           GRAGYLWACTFLNKHLGDNTIPPTTTDTVMRDIIRDGRTLSTIGCPLMYEWYGEKYWGAA
Sbjct: 181 GRAGYLWACTFLNKHLGDNTIPPTTTDTVMRDIIRDGRTLSTIGCPLMYEWYGEKYWGAA 240

Query: 241 HGLSGIMHVLLDMDLTKDDTECVKGTLRYMIQNRFPSGNYPVTEEDKHDRFVHWCHGAPG 300
           HGLSGIMHVLLDMDLTKDDTECVKGTLRYMIQNRFPSGNYPVTEEDKHDRFVHWCHGAPG
Sbjct: 241 HGLSGIMHVLLDMDLTKDDTECVKGTLRYMIQNRFPSGNYPVTEEDKHDRFVHWCHGAPG 300

Query: 301 ISLTLAKASQVFPEERFLEAIAEAAEVVWNRGLLKRVGICHGVSGNAYTFLALFRLTKKK 360
           ISLTLAKASQVFPEERFLEAIAEAAEVVWNRGLLKRVGICHGVSGNAYTFLALFRLTKKK
Sbjct: 301 ISLTLAKASQVFPEERFLEAIAEAAEVVWNRGLLKRVGICHGVSGNAYTFLALFRLTKKK 360

Query: 361 EHLYRAKAFACFLLDRAKQLIADGIMHSGDEPYSLFEGQVGMAYLFLDMINPLDSRFPGY 420
           EHLYRAKAFACFLLDRAKQLIADGIMHSGDEPYSLFEGQVGMAYLFLDMINPLDSRFPGY
Sbjct: 361 EHLYRAKAFACFLLDRAKQLIADGIMHSGDEPYSLFEGQVGMAYLFLDMINPLDSRFPGY 420

Query: 421 EL 422
           EL
Sbjct: 421 EL 422



>Os10g0497900 Lanthionine synthetase C-like family protein
          Length = 447

 Score =  471 bits (1213), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/425 (55%), Positives = 290/425 (68%), Gaps = 27/425 (6%)

Query: 1   MADRFFPNNMPGYADEGXXXXXXXXXXXXIPSTYXXXXXXXXXXPYPDLADRFLHAALHL 60
           MADR+FPN++P +  E                +                 +R L AAL +
Sbjct: 47  MADRYFPNDLPDFVAEAPDGGRGLLSLPYSSLS-----------------ERLLRAALRI 89

Query: 61  KQKVVHETWDKXXXXXXXXGEAVGDFXXXXXXXXXXXXXFRAYLVTGDRADLATCAEIVA 120
           K KV+ ETW +           V D+             F+++ VTG+RADLA   +IV 
Sbjct: 90  KDKVMEETWTRAR-------RQVTDYTLYTGALGTALLLFKSFQVTGNRADLALAGDIVK 142

Query: 121 ACDAASMG--AEIATFICGRAGVCALGAVVAKHAGDEAGVAHYLSAFKEIKIHSKSPDEL 178
            CDAAS G      TFICGRAGVCALGAV+AKH  D+  + HYLS+F EI +  K P+EL
Sbjct: 143 ECDAASRGLPRRFLTFICGRAGVCALGAVIAKHCNDQLLLTHYLSSFDEIIVTEKVPNEL 202

Query: 179 LYGRAGYLWACTFLNKHLGDNTIPPTTTDTVMRDIIRDGRTLSTIG-CPLMYEWYGEKYW 237
           LYGRAGYLWAC FLN HLG+ TIP     +V +DII +GR L+  G CPLMYEW+G+KYW
Sbjct: 203 LYGRAGYLWACLFLNTHLGEKTIPHEHITSVAKDIIDEGRKLAKKGNCPLMYEWHGKKYW 262

Query: 238 GAAHGLSGIMHVLLDMDLTKDDTECVKGTLRYMIQNRFPSGNYPVTEEDKHDRFVHWCHG 297
           GAAHGL+GIMHVL+  +L  D+ + VK TL YMI+NR+P+GNYP +E  + DR VHWCHG
Sbjct: 263 GAAHGLAGIMHVLMHTELKLDEKDDVKNTLLYMIRNRYPTGNYPSSEGSESDRLVHWCHG 322

Query: 298 APGISLTLAKASQVFPEERFLEAIAEAAEVVWNRGLLKRVGICHGVSGNAYTFLALFRLT 357
           APG++LTLAKA QVF +E F +  AEAAEVVWNRGLLKRVGICHGVSGNAY FL+L+RLT
Sbjct: 323 APGVALTLAKAYQVFHDEHFKQTAAEAAEVVWNRGLLKRVGICHGVSGNAYVFLSLYRLT 382

Query: 358 KKKEHLYRAKAFACFLLDRAKQLIADGIMHSGDEPYSLFEGQVGMAYLFLDMINPLDSRF 417
              E+LYRAKAFACFLL++A QLIADG MH GD P+SLFEG+ GMAYL LDM++P +S+F
Sbjct: 383 GNVEYLYRAKAFACFLLEKADQLIADGAMHGGDHPFSLFEGRAGMAYLLLDMVSPSESKF 442

Query: 418 PGYEL 422
           P YEL
Sbjct: 443 PAYEL 447



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,448,081
Number of extensions: 519686
Number of successful extensions: 1050
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1046
Number of HSP's successfully gapped: 2
Length of query: 422
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 318
Effective length of database: 11,605,545
Effective search space: 3690563310
Effective search space used: 3690563310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)