Os04g0529600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lanthionine synthetase C-like family protein.
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Os04g0529600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lanthionine synthetase C-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 225.24 | 0.705 | 5.13 | 3.31 | 1.5 | 1.49 | -1.03 | 2.79 | 0.184 | 23.1 | 20.84 | 1260 | -- | -- |
| 229.82 | 0.706 | 5.19 | 2.47 | 1.51 | 1.56 | -1.04 | -- | 0.0887 | 23.1 | 23.02 | 1292 | -- | -- |
| 229.32 | 0.705 | 5.14 | 3.33 | 1.57 | 1.48 | -- | 2.65 | 0.179 | 23.1 | 20.78 | 1333 | -- | -- |
| 232.22 | 0.71 | 5.2 | 2.59 | 1.52 | 1.56 | -- | -- | 0.057 | 23.2 | 23.09 | 1294 | -- | -- |
| 359.34 | 0.883 | 5.11 | 3.05 | -- | 1.94 | -- | 2.03 | 0.0958 | -- | 21.84 | 2355 | -- | -- |
| 319.33 | 0.838 | 5.14 | 3.09 | 1.69 | -- | -0.593 | -- | 0.334 | 23.5 | -- | -- | -- | -- |
| 320.84 | 0.839 | 5.14 | 3.11 | 1.7 | -- | -- | -- | 0.336 | 23.5 | -- | -- | -- | -- |
| 324.1 | 0.838 | 5.2 | 2.48 | -- | 2.48 | -- | -- | -0.0818 | -- | 22.46 | 939 | -- | -- |
| 326.17 | 0.841 | 5.36 | -- | 1.66 | 3.2 | -- | -- | -0.749 | 23.4 | 14.28 | 8805 | -- | -- |
| 501.24 | 1.05 | 5.1 | 3.16 | -- | -- | -- | -- | 0.355 | -- | -- | -- | -- | -- |
| 575.86 | 1.12 | 5.21 | -- | 1.73 | -- | -- | -- | -0.0102 | 23.6 | -- | -- | -- | -- |
| 415.65 | 0.95 | 5.39 | -- | -- | 3.14 | -- | -- | -0.957 | -- | 10.14 | 32618 | -- | -- |
| 764.05 | 1.29 | 5.18 | -- | -- | -- | -- | -- | 0.0045 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 218.91 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 6 | 220.02 | temperature | 20 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 31 | 221.31 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 49 | 221.67 | temperature | 20 | 14400 | < th | dose dependent | sin | 10 | NA |
| 186 | 223.33 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 3 |
| 259 | 224.10 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 7 |
| 284 | 224.35 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 290 | 224.42 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 295 | 224.52 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 2 |
| 300 | 224.65 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 3 |
| 322 | 224.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 16 |
| 379 | 225.56 | temperature | 20 | 1440 | > th | dose dependent | sin | 7 | NA |
| 517 | 226.63 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 12 |
| 524 | 226.66 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 12 |
| 532 | 226.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 550 | 226.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 577 | 226.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 601 | 226.94 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 631 | 227.03 | temperature | 30 | 4320 | < th | dose dependent | sin | 11 | NA |
| 692 | 227.20 | temperature | 20 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 714 | 227.32 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 719 | 227.34 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 6 |
| 766 | 227.51 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 769 | 227.55 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 781 | 227.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 22 |
| 782 | 227.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 828 | 227.75 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 924 | 227.99 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 933 | 228.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 938 | 228.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 946 | 228.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 951 | 228.09 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 6 |