Os10g0497900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lanthionine synthetase C-like family protein.
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Os10g0497900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lanthionine synthetase C-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.11 | 0.29 | 9.21 | 0.778 | 0.786 | 0.94 | 0.0614 | -0.12 | 0.413 | 22.1 | 21.58 | 338 | -- | -- |
| 38.06 | 0.287 | 9.2 | 0.8 | 0.765 | 0.938 | 0.0507 | -- | 0.416 | 22 | 21.65 | 365 | -- | -- |
| 38.06 | 0.287 | 9.2 | 0.774 | 0.768 | 0.933 | -- | -0.106 | 0.416 | 22 | 21.7 | 365 | -- | -- |
| 38.07 | 0.287 | 9.2 | 0.799 | 0.765 | 0.926 | -- | -- | 0.421 | 22 | 21.7 | 369 | -- | -- |
| 60.82 | 0.363 | 9.2 | 0.692 | -- | 1.33 | -- | -0.338 | 0.382 | -- | 23.16 | 626 | -- | -- |
| 53.79 | 0.344 | 9.17 | 1.01 | 0.979 | -- | 0.18 | -- | 0.576 | 20.6 | -- | -- | -- | -- |
| 53.9 | 0.344 | 9.17 | 1 | 0.978 | -- | -- | -- | 0.576 | 20.6 | -- | -- | -- | -- |
| 60.98 | 0.364 | 9.19 | 0.716 | -- | 1.29 | -- | -- | 0.391 | -- | 23.2 | 621 | -- | -- |
| 52.49 | 0.337 | 9.23 | -- | 0.664 | 1.33 | -- | -- | 0.311 | 21.5 | 14.88 | 556 | -- | -- |
| 107.76 | 0.485 | 9.15 | 1 | -- | -- | -- | -- | 0.568 | -- | -- | -- | -- | -- |
| 80.5 | 0.42 | 9.2 | -- | 0.975 | -- | -- | -- | 0.465 | 20.7 | -- | -- | -- | -- |
| 71.53 | 0.394 | 9.23 | -- | -- | 1.89 | -- | -- | 0.222 | -- | 14.9 | 645 | -- | -- |
| 134.23 | 0.541 | 9.17 | -- | -- | -- | -- | -- | 0.457 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 3 | 36.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 24 | 36.92 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 36 | 37.31 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 58 | 37.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 124 | 38.16 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 162 | 38.34 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 214 | 38.56 | temperature | 10 | 270 | > th | dose dependent | sin | 22 | NA |
| 255 | 38.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 289 | 38.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 15 |
| 314 | 38.94 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 10 |
| 479 | 39.34 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 15 |
| 490 | 39.37 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 507 | 39.41 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 22 |
| 510 | 39.42 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 554 | 39.50 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 564 | 39.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 13 |
| 624 | 39.62 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 657 | 39.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 660 | 39.67 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 667 | 39.68 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 18 |
| 803 | 39.86 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 7 |
| 832 | 39.89 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 899 | 39.98 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 979 | 40.06 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 21 |