BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0517400 Os04g0517400|AK059571
(279 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0517400 Conserved hypothetical protein 519 e-148
Os02g0624400 Glycosyl transferase, family 8 protein 340 5e-94
>Os04g0517400 Conserved hypothetical protein
Length = 279
Score = 519 bits (1337), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/265 (94%), Positives = 251/265 (94%)
Query: 1 SGWLMKRNLESFTTRWVPLNTGTGGQLWLVKPVGVWQDVRQTLEESLPGTGGGRSPHDQL 60
SGWLMKRNLESFTTRWVPLNTGTGGQLWLVKPVGVWQDVRQTLEESLPGTGGGRSPHDQL
Sbjct: 1 SGWLMKRNLESFTTRWVPLNTGTGGQLWLVKPVGVWQDVRQTLEESLPGTGGGRSPHDQL 60
Query: 61 VVKVLFILPVLLLTCGYNQSCSQTNKELLNIRSLCAFARRDRYKYKSEEAFPSYSVMGVS 120
VVKVLFILPVLLLTCGYNQSCSQTNKELLNIRSLCAFARRDRYKYKSEEAFPSYSVMGVS
Sbjct: 61 VVKVLFILPVLLLTCGYNQSCSQTNKELLNIRSLCAFARRDRYKYKSEEAFPSYSVMGVS 120
Query: 121 SSAFSNSNQRFSNGMHSKLPSYFGALTVLACFMSAGVSFAFAFAIIPKQIMPWTGLLLMF 180
SSAFSNSNQRFSNGMHSKLPSYFGALTVLACFMSAGVSFAFAFAIIPKQIMPWTGLLLMF
Sbjct: 121 SSAFSNSNQRFSNGMHSKLPSYFGALTVLACFMSAGVSFAFAFAIIPKQIMPWTGLLLMF 180
Query: 181 EWTFVSFFLLFGSYLRFVYRWGSLDANHVGHSRFDSSENHMVTGRHHNMSDCDIDATFYW 240
EWTFVSFFLLFGSYLRFVYRWGSLDANHVGHSRFDSSENHMVTGRHHNMSDCDIDATFYW
Sbjct: 181 EWTFVSFFLLFGSYLRFVYRWGSLDANHVGHSRFDSSENHMVTGRHHNMSDCDIDATFYW 240
Query: 241 TGMAIIAIXXXXXXXXXXXXXXFAK 265
TGMAIIAI FAK
Sbjct: 241 TGMAIIAIVTVLLPTLLGVTALFAK 265
>Os02g0624400 Glycosyl transferase, family 8 protein
Length = 547
Score = 340 bits (873), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 158/220 (71%), Positives = 180/220 (81%)
Query: 28 WLVKPVGVWQDVRQTLEESLPGTGGGRSPHDQLVVKVLFILPVLLLTCGYNQSCSQTNKE 87
WLVKPV VWQD+R+ LEESLPGTGGGR+PHDQ VVK+LF LP+ +L CGY SC QTNKE
Sbjct: 265 WLVKPVAVWQDIRKNLEESLPGTGGGRNPHDQSVVKILFSLPLFMLICGYYGSCFQTNKE 324
Query: 88 LLNIRSLCAFARRDRYKYKSEEAFPSYSVMGVSSSAFSNSNQRFSNGMHSKLPSYFGALT 147
LL IRSLCAFARR RYKYKSEEA PSYS +G +SS+F S+Q+ NG H KLPSYFGA+T
Sbjct: 325 LLCIRSLCAFARRARYKYKSEEALPSYSTIGAASSSFGISHQKSHNGAHLKLPSYFGAIT 384
Query: 148 VLACFMSAGVSFAFAFAIIPKQIMPWTGLLLMFEWTFVSFFLLFGSYLRFVYRWGSLDAN 207
VL CF+SA +S AFAF IIP+Q+MPWTGLLLM+EWT V+FFLLFGSYLR VY WGS AN
Sbjct: 385 VLVCFISALISLAFAFIIIPRQVMPWTGLLLMYEWTSVTFFLLFGSYLRVVYNWGSSSAN 444
Query: 208 HVGHSRFDSSENHMVTGRHHNMSDCDIDATFYWTGMAIIA 247
HVGH+ DSSENH G N SDCD DA FYW+GMAI++
Sbjct: 445 HVGHNNLDSSENHAGAGLQRNTSDCDTDAAFYWSGMAILS 484
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.137 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,783,048
Number of extensions: 362557
Number of successful extensions: 963
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 963
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 179
Effective length of database: 11,814,401
Effective search space: 2114777779
Effective search space used: 2114777779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)