Os04g0517400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0517400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.21 | 0.258 | 11.1 | 0.362 | 0.941 | -0.47 | 0.207 | 0.575 | 0.469 | 23.8 | 10 | 1442 | -- | -- |
| 30.92 | 0.259 | 11.1 | 0.351 | 0.934 | -0.501 | 0.244 | -- | 0.464 | 23.8 | 10.01 | 1444 | -- | -- |
| 30.4 | 0.257 | 11.1 | 0.359 | 0.941 | -0.467 | -- | 0.601 | 0.469 | 23.8 | 10 | 1440 | -- | -- |
| 31.12 | 0.26 | 11.1 | 0.329 | 0.934 | -0.468 | -- | -- | 0.467 | 23.8 | 10 | 1448 | -- | -- |
| 41.76 | 0.303 | 11.1 | 0.191 | -- | -0.703 | -- | 0.0513 | 0.284 | -- | 10 | 1440 | -- | -- |
| 36.71 | 0.284 | 11.1 | 0.123 | 0.93 | -- | 0.141 | -- | 0.295 | 23.7 | -- | -- | -- | -- |
| 36.79 | 0.284 | 11.1 | 0.118 | 0.929 | -- | -- | -- | 0.295 | 23.8 | -- | -- | -- | -- |
| 38.88 | 0.29 | 11.1 | 0.209 | -- | -0.741 | -- | -- | 0.368 | -- | 10.06 | 44 | -- | -- |
| 31.89 | 0.263 | 11.1 | -- | 0.921 | -0.356 | -- | -- | 0.377 | 23.9 | 3.811 | 1450 | -- | -- |
| 91.15 | 0.446 | 11.1 | 0.145 | -- | -- | -- | -- | 0.306 | -- | -- | -- | -- | -- |
| 37.16 | 0.285 | 11.1 | -- | 0.931 | -- | -- | -- | 0.282 | 23.8 | -- | -- | -- | -- |
| 38.37 | 0.289 | 11.1 | -- | -- | -0.73 | -- | -- | 0.323 | -- | 5.19 | 88 | -- | -- |
| 91.7 | 0.447 | 11.1 | -- | -- | -- | -- | -- | 0.29 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.97 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 2 | 28.99 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 3 | 29.22 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 13 | 29.36 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 23 | 29.41 | humidity | 50 | 10 | > th | dose dependent | rect. | 12 | 20 |
| 32 | 29.51 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 38 | 29.59 | humidity | 60 | 10 | > th | dose dependent | rect. | 12 | 22 |
| 63 | 29.74 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 66 | 29.75 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 72 | 29.78 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 73 | 29.79 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 75 | 29.80 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 10 |
| 83 | 29.82 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 89 | 29.83 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 16 |
| 97 | 29.84 | radiation | 10 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 106 | 29.88 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 116 | 29.91 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 125 | 29.93 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 139 | 29.94 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 142 | 29.95 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 165 | 30.02 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 172 | 30.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 175 | 30.03 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 200 | 30.05 | humidity | 70 | 90 | > th | dose independent | rect. | 12 | 20 |
| 232 | 30.10 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 252 | 30.12 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 269 | 30.13 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 279 | 30.14 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 282 | 30.14 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 298 | 30.14 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 302 | 30.15 | radiation | 10 | 1440 | > th | dose independent | sin | 23 | NA |
| 303 | 30.15 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 304 | 30.15 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 321 | 30.16 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 385 | 30.21 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 389 | 30.21 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 508 | 30.24 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 512 | 30.24 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 548 | 30.29 | humidity | 70 | 1440 | > th | dose independent | sin | 18 | NA |
| 579 | 30.31 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 774 | 30.41 | humidity | 80 | 1440 | < th | dose dependent | sin | 23 | NA |
| 854 | 30.47 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 884 | 30.49 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 8 |