BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0512500 Os04g0512500|AK107826
         (131 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0512500  Conserved hypothetical protein                      258   1e-69
Os02g0621600  Conserved hypothetical protein                       79   9e-16

>Os04g0512500 Conserved hypothetical protein
          Length = 131

 Score =  258 bits (658), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MSLSEKLEAARVAVGKRKERELLAQAPANKALAEPGTNKPAPGPVPNNKLLAGHLAHEFL 60
           MSLSEKLEAARVAVGKRKERELLAQAPANKALAEPGTNKPAPGPVPNNKLLAGHLAHEFL
Sbjct: 1   MSLSEKLEAARVAVGKRKERELLAQAPANKALAEPGTNKPAPGPVPNNKLLAGHLAHEFL 60

Query: 61  TRGTLQGRRVEPTKPSQAAALHPGEPVPEPEPDAAKRRRYAEVSWLLMASGARVPGVVNP 120
           TRGTLQGRRVEPTKPSQAAALHPGEPVPEPEPDAAKRRRYAEVSWLLMASGARVPGVVNP
Sbjct: 61  TRGTLQGRRVEPTKPSQAAALHPGEPVPEPEPDAAKRRRYAEVSWLLMASGARVPGVVNP 120

Query: 121 TQLGRWLQIKE 131
           TQLGRWLQIKE
Sbjct: 121 TQLGRWLQIKE 131



>Os02g0621600 Conserved hypothetical protein
          Length = 156

 Score = 79.0 bits (193), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 51/83 (61%), Gaps = 6/83 (7%)

Query: 49  KLLAGHLAHEFLTRGTLQGRRVEPTKPSQAAALHPGEPVPEPEPDAAKRRRYAEVSWLLM 108
           KL+AG+LAHEFL  GTL G R E    + A A                R RYAE S LLM
Sbjct: 80  KLMAGYLAHEFLRSGTLLGERPESNSKAPAPAAS------AGPAAPDPRTRYAEASLLLM 133

Query: 109 ASGARVPGVVNPTQLGRWLQIKE 131
           A GARVPGVVNPTQLG WL+IKE
Sbjct: 134 AGGARVPGVVNPTQLGHWLRIKE 156



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,350,629
Number of extensions: 267373
Number of successful extensions: 1141
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1140
Number of HSP's successfully gapped: 3
Length of query: 131
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 42
Effective length of database: 12,388,755
Effective search space: 520327710
Effective search space used: 520327710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 150 (62.4 bits)