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Os04g0512500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.44 (0.0289) R2 : 0.57
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.03 (0.0993) R2dC : 0.736 R2C : -0.484
β3 : -3.03 (0.128) R2dE : 1.04 R2E : -0.215
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.437 (0.0615) R2dN8 : 0.0678 R2N8 : -0.0029
σ : 0.542
deviance : 135.41
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_____
C
peak time of C : 9.1
E
wheather : temperature
threshold : 36.88
memory length : 451
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.92
open length of G : 3.78

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
123.6 0.522 7.44 0.104 2.18 -2.85 1.42 0.796 -0.432 9.1 43.42 437 5.41 4.61
123.95 0.519 7.43 0.171 2.18 -2.86 2.06 -- -0.415 9.08 42.58 441 5.43 4.58
124.36 0.519 7.46 0.0115 2 -2.9 -- 1.74 -0.468 8.94 37.57 444 5.87 3.86
134.96 0.541 7.45 0.168 2.01 -2.95 -- -- -0.45 9.01 37.35 445 5.87 3.87
168.27 0.604 7.48 0.192 -- -2.04 -- -0.729 -0.387 -- 46.08 1016 6.02 5.99
215.97 0.689 7.43 0.442 1.29 -- 0.161 -- -0.207 4.66 -- -- -- --
216.02 0.688 7.43 0.441 1.29 -- -- -- -0.208 4.61 -- -- -- --
167.01 0.602 7.48 0.238 -- -1.96 -- -- -0.357 -- 58.49 1030 5.85 5.97
135.41 0.542 7.44 -- 2.03 -3.03 -- -- -0.437 9.1 36.88 451 5.92 3.78
304.44 0.815 7.44 0.491 -- -- -- -- -0.175 -- -- -- -- --
221.15 0.696 7.44 -- 1.3 -- -- -- -0.258 4.6 -- -- -- --
167.83 0.603 7.52 -- -- -2.05 -- -- -0.443 -- 54.09 1146 6.58 3.33
310.8 0.823 7.45 -- -- -- -- -- -0.229 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 139.17 temperature 30.0 270 < th dose dependent rect. 6 5
2 140.05 temperature 30.0 270 < th dose dependent rect. 6 7
3 140.09 radiation 10.0 90 < th dose dependent rect. 17 10
5 140.96 humidity 50.0 90 > th dose dependent rect. 17 10
6 141.90 atmosphere 1015.0 270 < th dose independent rect. 6 19
9 142.74 temperature 30.0 270 < th dose dependent rect. 7 3
10 142.91 temperature 30.0 90 < th dose independent rect. 17 10
12 143.75 temperature 30.0 270 < th dose independent rect. 6 7
13 143.78 precipitation 0.1 270 < th dose independent rect. 13 17
14 143.78 precipitation 0.1 270 < th dose dependent rect. 13 17
18 144.01 temperature 15.0 90 > th dose independent rect. 3 15
23 144.44 radiation 1.0 90 < th dose independent rect. 17 10
24 144.61 temperature 10.0 270 > th dose dependent rect. 2 15
25 144.70 precipitation 0.1 90 < th dose independent rect. 3 4
26 144.70 precipitation 0.1 90 < th dose dependent rect. 3 4
27 144.87 wind 9.0 90 < th dose dependent rect. 3 4
28 144.89 wind 5.0 90 < th dose independent rect. 3 4
29 145.06 radiation 40.0 90 < th dose dependent rect. 3 6
31 145.15 humidity 60.0 90 > th dose independent rect. 17 10
35 145.32 precipitation 0.1 90 < th dose independent rect. 3 15
36 145.32 precipitation 0.1 90 < th dose dependent rect. 3 15
45 145.65 precipitation 0.1 270 < th dose independent rect. 1 5
46 145.65 precipitation 0.1 270 < th dose dependent rect. 1 5
48 145.68 precipitation 0.1 270 < th dose independent rect. 3 2
49 145.68 precipitation 0.1 270 < th dose dependent rect. 3 2
51 145.82 wind 9.0 270 < th dose independent rect. 12 18
52 145.83 temperature 10.0 270 > th dose independent rect. 6 6
53 145.83 atmosphere 995.0 270 > th dose independent rect. 6 6
54 145.83 atmosphere 1015.0 270 < th dose independent rect. 6 6
55 145.83 temperature 10.0 270 > th dose independent rect. 12 18
56 145.86 radiation 20.0 90 < th dose independent rect. 3 4
61 145.90 humidity 70.0 90 > th dose independent rect. 3 4
63 145.94 radiation 10.0 270 < th dose independent rect. 1 5
67 146.08 temperature 10.0 90 > th dose independent rect. 3 4
69 146.08 temperature 30.0 90 < th dose independent rect. 3 4
70 146.08 humidity 50.0 90 > th dose independent rect. 3 4
72 146.08 atmosphere 995.0 90 > th dose independent rect. 3 4
73 146.08 atmosphere 1015.0 90 < th dose independent rect. 3 4
75 146.08 temperature 10.0 90 > th dose independent rect. 7 20
77 146.19 precipitation 0.1 270 < th dose independent rect. 6 6
78 146.19 precipitation 0.1 270 < th dose dependent rect. 6 6
80 146.23 wind 7.0 270 < th dose independent rect. 1 5
84 146.30 temperature 10.0 270 > th dose dependent rect. 3 2
85 146.31 radiation 20.0 90 < th dose independent rect. 3 6
87 146.34 humidity 50.0 270 > th dose independent rect. 6 6
90 146.43 atmosphere 1010.0 270 < th dose independent rect. 1 5
92 146.48 radiation 40.0 90 < th dose dependent rect. 3 4
95 146.58 wind 3.0 30 < th dose independent rect. 3 6
99 146.70 temperature 10.0 270 > th dose independent rect. 1 5
101 146.70 temperature 30.0 270 < th dose independent rect. 1 5
102 146.70 humidity 50.0 270 > th dose independent rect. 1 5
105 146.70 atmosphere 995.0 270 > th dose independent rect. 1 5
112 146.77 radiation 40.0 270 < th dose dependent rect. 1 5
116 146.90 atmosphere 995.0 90 > th dose independent rect. 7 20
119 146.96 atmosphere 1015.0 270 < th dose independent rect. 5 21
123 147.02 humidity 50.0 90 > th dose dependent rect. 3 4
124 147.04 wind 9.0 270 < th dose dependent rect. 3 2
125 147.06 wind 7.0 270 < th dose independent rect. 3 2
126 147.08 radiation 1.0 270 < th dose independent rect. 3 2
128 147.10 radiation 10.0 270 < th dose dependent rect. 3 2
129 147.12 wind 9.0 270 < th dose independent rect. 6 6
135 147.18 temperature 10.0 270 > th dose independent rect. 3 2
137 147.18 temperature 30.0 270 < th dose independent rect. 3 2
138 147.18 humidity 50.0 270 > th dose independent rect. 3 2
141 147.18 atmosphere 995.0 270 > th dose independent rect. 3 2
142 147.18 atmosphere 1010.0 270 < th dose independent rect. 3 2
147 147.18 temperature 10.0 270 > th dose independent rect. 5 22
149 147.19 wind 9.0 90 < th dose independent rect. 3 15
170 147.50 humidity 50.0 270 > th dose dependent rect. 3 2
172 147.52 humidity 50.0 270 > th dose dependent rect. 1 5
176 147.61 wind 7.0 30 < th dose dependent rect. 3 6
182 147.77 temperature 10.0 270 > th dose dependent rect. 1 5
192 147.94 wind 9.0 270 < th dose dependent rect. 1 5
228 148.30 atmosphere 1015.0 90 < th dose independent rect. 18 9
230 148.34 atmosphere 995.0 90 > th dose independent rect. 18 9
234 148.39 wind 9.0 90 < th dose independent rect. 7 20
237 148.42 wind 7.0 90 < th dose independent rect. 18 9
238 148.42 temperature 10.0 90 > th dose independent rect. 18 9
244 148.42 atmosphere 1015.0 90 < th dose independent rect. 3 15
251 148.52 radiation 1.0 90 < th dose dependent rect. 7 20
257 148.57 radiation 1.0 90 < th dose independent rect. 8 19
260 148.61 humidity 50.0 90 > th dose dependent rect. 3 6
279 148.76 atmosphere 1015.0 30 < th dose independent rect. 9 18
281 148.78 radiation 1.0 90 < th dose independent rect. 13 14
305 149.10 wind 1.0 270 > th dose independent rect. 6 6
364 150.01 precipitation 0.1 270 < th dose independent rect. 6 19
366 150.01 precipitation 0.1 270 < th dose dependent rect. 6 19
387 150.11 wind 1.0 270 > th dose independent rect. 12 17
396 150.22 wind 9.0 90 < th dose dependent rect. 18 9
397 150.32 temperature 30.0 270 < th dose dependent rect. 9 1
415 150.54 precipitation 0.1 10 < th dose independent rect. 14 17
416 150.54 precipitation 0.1 10 < th dose dependent rect. 14 17
418 150.57 wind 9.0 270 < th dose independent rect. 5 21
428 150.70 radiation 40.0 90 < th dose independent rect. 14 17
445 150.80 precipitation 0.1 30 < th dose independent rect. 3 6
449 150.80 precipitation 0.1 30 < th dose dependent rect. 3 6
505 151.33 wind 9.0 10 < th dose independent rect. 14 17
511 151.37 precipitation 0.1 90 < th dose independent rect. 18 9
512 151.37 precipitation 0.1 90 < th dose dependent rect. 18 9
547 151.50 temperature 10.0 10 > th dose independent rect. 7 7
549 151.50 atmosphere 995.0 10 > th dose independent rect. 7 7
550 151.50 atmosphere 1015.0 10 < th dose independent rect. 7 7
551 151.50 temperature 10.0 10 > th dose independent rect. 14 17
553 151.52 precipitation 0.1 10 < th dose independent rect. 7 7
554 151.52 precipitation 0.1 10 < th dose dependent rect. 7 7
566 151.71 atmosphere 995.0 270 > th dose independent rect. 5 21
572 151.80 radiation 40.0 10 < th dose independent rect. 14 17
590 152.03 atmosphere 995.0 270 > th dose independent rect. 12 18
648 152.48 humidity 50.0 270 > th dose independent rect. 6 19
652 152.53 temperature 10.0 1440 > th dose independent rect. 8 7
655 152.53 temperature 10.0 1440 > th dose independent rect. 15 17
678 152.67 atmosphere 995.0 30 > th dose independent rect. 9 18
683 152.70 humidity 50.0 270 > th dose dependent rect. 6 7
723 153.18 radiation 1.0 10 > th dose independent rect. 7 7
738 153.32 radiation 1.0 90 > th dose independent rect. 7 7
780 153.61 precipitation 0.1 10 < th dose independent rect. 9 18
781 153.61 precipitation 0.1 10 < th dose dependent rect. 9 18
785 153.70 wind 1.0 270 > th dose independent rect. 1 5
805 153.79 precipitation 0.1 270 < th dose independent rect. 5 21
806 153.79 precipitation 0.1 270 < th dose dependent rect. 5 21
832 154.12 atmosphere 1015.0 90 < th dose dependent rect. 3 4
852 154.33 temperature 10.0 90 > th dose dependent rect. 19 8
875 154.55 wind 9.0 30 < th dose independent rect. 9 18
967 155.31 wind 1.0 270 > th dose independent rect. 3 1