BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0512500 Os04g0512500|AK107826
         (131 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44060.1  | chr5:17731209-17731661 FORWARD LENGTH=151           80   3e-16
AT1G04000.1  | chr1:1028415-1028873 REVERSE LENGTH=153             73   5e-14
AT3G23440.1  | chr3:8404358-8404684 REVERSE LENGTH=109             65   1e-11

>AT5G44060.1 | chr5:17731209-17731661 FORWARD LENGTH=151
          Length = 150

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 6/92 (6%)

Query: 44  PVPNNKLLAGHLAHEFLTRGTLQGRRVEPTK----PSQAAALHP--GEPVPEPEPDAAKR 97
           PV +N+LLAG+LAHEFL  GTL G    PTK    P    ++ P   +P  + EP   KR
Sbjct: 59  PVCSNQLLAGYLAHEFLNNGTLFGELWNPTKAQAGPLTTQSIDPRKNKPSHDIEPSDHKR 118

Query: 98  RRYAEVSWLLMASGARVPGVVNPTQLGRWLQI 129
           RRY EV+ +L   G  +PG+VNP+QL R+L++
Sbjct: 119 RRYVEVANILRVDGTHLPGIVNPSQLARFLKL 150



>AT1G04000.1 | chr1:1028415-1028873 REVERSE LENGTH=153
          Length = 152

 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 8/94 (8%)

Query: 41  APGPVPNNKL-LAGHLAHEFLTRGTLQGRRVEPTK----PSQAAALHPGEPVPEPEPDAA 95
           A  P+ +N+L LAG+L+HE+LT+GTL G +    +     S+    H  EP  E EP   
Sbjct: 62  AAEPIGSNQLMLAGYLSHEYLTQGTLFGEQWNQARAQAESSKIKPSHTVEPAEECEP--- 118

Query: 96  KRRRYAEVSWLLMASGARVPGVVNPTQLGRWLQI 129
           KR+RY EV+ LL + GA++PG+VNP QL R+L++
Sbjct: 119 KRKRYREVANLLRSDGAQLPGIVNPAQLARFLKL 152



>AT3G23440.1 | chr3:8404358-8404684 REVERSE LENGTH=109
          Length = 108

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 48  NKLLAGHLAHEFLTRGTLQGRRVEPTKPSQAAALHPGEPVPEPEPDAAKRRRYAEVSWLL 107
           N LLAG++AHE+LT GT+ GR++          + P  P+   E   A R+ Y+EV+ + 
Sbjct: 29  NWLLAGYMAHEYLTCGTMLGRKLYSGWAEVGPLVSP-SPLQSREVKKA-RQSYSEVASVF 86

Query: 108 MASGARVPGVVNPTQLGRWLQI 129
              G  VPGVVNPTQL +W+Q+
Sbjct: 87  KTDGNHVPGVVNPTQLAKWIQM 108



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,994,249
Number of extensions: 125574
Number of successful extensions: 328
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 3
Length of query: 131
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 44
Effective length of database: 8,721,377
Effective search space: 383740588
Effective search space used: 383740588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 106 (45.4 bits)