BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0511700 Os04g0511700|AK102761
         (464 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0511700  Conserved hypothetical protein                      742   0.0  
Os03g0138500  Conserved hypothetical protein                       84   2e-16

>Os04g0511700 Conserved hypothetical protein
          Length = 464

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/464 (80%), Positives = 375/464 (80%)

Query: 1   GCFLACFGDXXXXXXXXXXXXXXXXXXXXDHVALLGKALTAVDVEAKEEVEPPPLLQEAK 60
           GCFLACFGD                    DHVALLGKALTAVDVEAKEEVEPPPLLQEAK
Sbjct: 1   GCFLACFGDRRRRRQPRRQSPARSPPPRPDHVALLGKALTAVDVEAKEEVEPPPLLQEAK 60

Query: 61  DVLLXXXXXXXXXXXXXXTGARPGKELSEQKASPASSLLPEKQVTPPLSPVAHSPPLAEA 120
           DVLL              TGARPGKELSEQKASPASSLLPEKQVTPPLSPVAHSPPLAEA
Sbjct: 61  DVLLAPPPMPVEAAEEVVTGARPGKELSEQKASPASSLLPEKQVTPPLSPVAHSPPLAEA 120

Query: 121 VVCTPDPELREVGGQESRSSGKKKVTFDMNVTAYENTAPADQXXXXXXXVSMVENEDGKH 180
           VVCTPDPELREVGGQESRSSGKKKVTFDMNVTAYENTAPADQ       VSMVENEDGKH
Sbjct: 121 VVCTPDPELREVGGQESRSSGKKKVTFDMNVTAYENTAPADQEEEPPEPVSMVENEDGKH 180

Query: 181 MQKDVLLPENHRYRNCSXXXXXXXXXXXXXXXXXXXXXXXXXFVDCKIDLVDKDELYTED 240
           MQKDVLLPENHRYRNCS                         FVDCKIDLVDKDELYTED
Sbjct: 181 MQKDVLLPENHRYRNCSDSEEEEDEYGEDDNYGDDSDEEEEDFVDCKIDLVDKDELYTED 240

Query: 241 IKQESHESLFSLQMYKDQQNDNEVXXXXXXXXXXXVEEQSPLIQRNNHRDRGQYVRPVLN 300
           IKQESHESLFSLQMYKDQQNDNEV           VEEQSPLIQRNNHRDRGQYVRPVLN
Sbjct: 241 IKQESHESLFSLQMYKDQQNDNEVSSPAPKSSSTSVEEQSPLIQRNNHRDRGQYVRPVLN 300

Query: 301 PVQNMSQWKEVKAQAAPAKKSNKENVNSVPKVGATPENSIKKEVSVDASLSTWLVSSDNS 360
           PVQNMSQWKEVKAQAAPAKKSNKENVNSVPKVGATPENSIKKEVSVDASLSTWLVSSDNS
Sbjct: 301 PVQNMSQWKEVKAQAAPAKKSNKENVNSVPKVGATPENSIKKEVSVDASLSTWLVSSDNS 360

Query: 361 TVDKVQSGSPCSISTVNRDERPVLGALTVDDLKQXXXXXXXXXXXXHNREEAILGTVGSY 420
           TVDKVQSGSPCSISTVNRDERPVLGALTVDDLKQ            HNREEAILGTVGSY
Sbjct: 361 TVDKVQSGSPCSISTVNRDERPVLGALTVDDLKQSSATSSPRRSPSHNREEAILGTVGSY 420

Query: 421 WSSTKQDNAHCSSRSDSGTNGIPNTTSKYREVHSTLKSYVSSDF 464
           WSSTKQDNAHCSSRSDSGTNGIPNTTSKYREVHSTLKSYVSSDF
Sbjct: 421 WSSTKQDNAHCSSRSDSGTNGIPNTTSKYREVHSTLKSYVSSDF 464



>Os03g0138500 Conserved hypothetical protein
          Length = 406

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 136/330 (41%), Gaps = 59/330 (17%)

Query: 142 KKKVTFDMNVTAYENTAPADQXXXXXXXVSMVENEDGKHMQ--------KDVLLPENHRY 193
           KKKVTFD NVT YE  A  +              +D    +        K    P NHRY
Sbjct: 78  KKKVTFDPNVTTYEAAAIPEAEEEDDEEAEPAAGDDKDEARWMLAPDCAKSEAFPLNHRY 137

Query: 194 RNCS---XXXXXXXXXXXXXXXXXXXXXXXXXFVDCKIDLVDKDELYTEDIKQ-ESHESL 249
            NC+                              +C ID  D D L      + E+ ESL
Sbjct: 138 SNCAYGDNDSEYDEDEDEDEEEDEDEEEEADGLDECAIDDEDDDGLLGIGRGEDEACESL 197

Query: 250 FSLQMYKDQQNDNEVXXXXXXXXXXXVEEQSPLIQRNNHRDRGQYVRPVLNPVQNMSQWK 309
           F L M K +++                 E  P  Q+   RD      PVL+ V+N++QWK
Sbjct: 198 FLLPMSKTKESGG----GHEAASGVTSPEAPPAPQQT--RD----ANPVLSSVENLTQWK 247

Query: 310 EVKAQAAP-------AKKSNKENVNSVPKVGA--------------TPENSIKKEVSVDA 348
           + KA+AA        + K N+   N +P+                 +P    K+EVSVDA
Sbjct: 248 DAKARAATATAAPNASDKENRTTANLLPEPAIPAKKREWQVVCSDYSPSTPSKQEVSVDA 307

Query: 349 SLSTWLVSSDNSTVDKVQSGSPCSISTVNRDERPVLGALTVDDLK---QXXXXXXXXXXX 405
           SLSTWL SS     + V+S SP     ++R++RP+LGALTV+D+K               
Sbjct: 308 SLSTWLGSSGTPESNSVRSFSP-----ISREDRPILGALTVEDIKISSANSSPRRSRSPS 362

Query: 406 XHNREEAILGTVGSYWSSTKQDNAHCSSRS 435
               +  ILGTVG+YW        +CSS++
Sbjct: 363 PSPDDMPILGTVGAYW--------NCSSKA 384



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.125    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,330,572
Number of extensions: 482877
Number of successful extensions: 1597
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1592
Number of HSP's successfully gapped: 2
Length of query: 464
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 360
Effective length of database: 11,605,545
Effective search space: 4177996200
Effective search space used: 4177996200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 158 (65.5 bits)