Os04g0511700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0511700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 329.76 | 0.853 | 3.65 | -0.7 | 0.842 | 1.59 | 0.179 | -0.381 | -0.424 | 19.8 | 21.31 | 1866 | -- | -- |
| 329.83 | 0.846 | 3.64 | -0.583 | 0.842 | 1.56 | 0.145 | -- | -0.387 | 19.8 | 21.5 | 1866 | -- | -- |
| 329.64 | 0.846 | 3.66 | -0.808 | 0.828 | 1.6 | -- | -0.833 | -0.44 | 19.8 | 22.16 | 1868 | -- | -- |
| 329.9 | 0.846 | 3.64 | -0.588 | 0.843 | 1.56 | -- | -- | -0.388 | 19.8 | 21.5 | 1868 | -- | -- |
| 335.93 | 0.854 | 3.64 | -0.708 | -- | 2.19 | -- | -0.731 | -0.447 | -- | 21.59 | 575 | -- | -- |
| 402.78 | 0.941 | 3.57 | -0.0388 | 1.01 | -- | 0.223 | -- | -0.0426 | 19.8 | -- | -- | -- | -- |
| 402.92 | 0.94 | 3.57 | -0.0443 | 1.01 | -- | -- | -- | -0.0422 | 19.8 | -- | -- | -- | -- |
| 336.14 | 0.854 | 3.62 | -0.554 | -- | 2.13 | -- | -- | -0.412 | -- | 21.4 | 579 | -- | -- |
| 337.82 | 0.856 | 3.62 | -- | 0.856 | 1.39 | -- | -- | -0.283 | 19.7 | 22.14 | 1870 | -- | -- |
| 458.4 | 1 | 3.54 | -0.0565 | -- | -- | -- | -- | -0.0564 | -- | -- | -- | -- | -- |
| 402.97 | 0.939 | 3.57 | -- | 1.01 | -- | -- | -- | -0.0373 | 19.8 | -- | -- | -- | -- |
| 343.65 | 0.863 | 3.6 | -- | -- | 2 | -- | -- | -0.324 | -- | 21.8 | 569 | -- | -- |
| 458.48 | 0.999 | 3.54 | -- | -- | -- | -- | -- | -0.0501 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 321.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 25 | 328.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 21 |
| 29 | 328.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 43 | 329.87 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 46 | 330.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 48 | 330.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 50 | 330.40 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 55 | 330.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 60 | 330.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 123 | 331.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 17 |
| 133 | 331.78 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 143 | 331.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 22 |
| 153 | 331.91 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 9 |
| 168 | 331.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 16 |
| 213 | 332.21 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 229 | 332.27 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 268 | 332.38 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 276 | 332.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 283 | 332.43 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 295 | 332.48 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 10 |
| 303 | 332.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 334 | 332.64 | temperature | 25 | 4320 | > th | dose dependent | sin | 3 | NA |
| 373 | 332.73 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 13 |
| 509 | 333.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 18 |
| 706 | 333.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 725 | 333.61 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 8 |
| 785 | 333.72 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 881 | 333.90 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 6 |