BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0511700 Os04g0511700|AK102761
         (464 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04030.1  | chr1:1040597-1042313 FORWARD LENGTH=435             96   5e-20
AT5G44040.1  | chr5:17719896-17721348 REVERSE LENGTH=417           86   5e-17
AT2G33400.1  | chr2:14153331-14154401 REVERSE LENGTH=273           53   3e-07

>AT1G04030.1 | chr1:1040597-1042313 FORWARD LENGTH=435
          Length = 434

 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 151/375 (40%), Gaps = 105/375 (28%)

Query: 142 KKKVTFDMNVTAYENTAPAD--------------------QXXXXXXXVSMVENEDGKHM 181
           +K+VTFD  V  YE+    +                            + +  N  G + 
Sbjct: 76  RKRVTFDSKVKTYEHVVSEESVELSEEKNEEVESEKRSLKSSKTDDQIIEVASNSSGSY- 134

Query: 182 QKDVLLPENHRYRNCSXXXXXXXXXXXXXXXXXXXXXXXXXFVDCKIDLVDKDELYTEDI 241
                 PENHRY+NC                             C    +D+DE Y  D+
Sbjct: 135 ------PENHRYKNCRESDDDIEEDEFD----------------CSDSDLDEDEEYYSDV 172

Query: 242 KQESHESLF--SLQMYKDQQNDNEVXXXXXXXXXXXVEEQSPLIQRNNH--RDRGQY-VR 296
              S +SL   + ++Y     D               EE    ++R+N   RD   Y  +
Sbjct: 173 GF-SEDSLHNPTKEVYTQDIGDK-------------TEEIDSKLRRSNETVRDGNHYDGQ 218

Query: 297 PVLNPVQNMSQWKEVKAQA-APAKKSNKENVNSV-------------------------- 329
            VLNPV+N++QWK  K++     K+S KEN N +                          
Sbjct: 219 GVLNPVENLTQWKSAKSKGRTKQKQSQKENSNFIADQEEKRDSSSFGTDPQIDDITLSVK 278

Query: 330 PKVGATPENSIKKEVSVDASLSTWLVSSDNS-----------TVDKVQSGSPCSIS-TVN 377
           PK    P+    +E++VDASLSTWL +S++            T +K++S S  S    +N
Sbjct: 279 PKCRIEPKKLRNQELAVDASLSTWLSTSESGSECNSASMYTLTPEKLKSTSCYSKPLRIN 338

Query: 378 RDERPVLGALTVDDLKQXXXXXXXXXXXXHNREEA-ILGTVGSYWSSTKQDNAHCSSRSD 436
            D+RPVL ALT++D+KQ             + +E  I+GTVG YW + +     C S   
Sbjct: 339 HDDRPVLCALTLEDIKQFSATSTPRKSPSKSPDETPIIGTVGGYWGN-RSKAIDCGSA-- 395

Query: 437 SGTNGIPNTTSKYRE 451
           S   GIPNT+SKYRE
Sbjct: 396 SSFKGIPNTSSKYRE 410



>AT5G44040.1 | chr5:17719896-17721348 REVERSE LENGTH=417
          Length = 416

 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 36/166 (21%)

Query: 289 RDRGQYVRPVLNPVQNMSQWKEVKAQAAPAKKS--NKENV--------NSVPKVGAT--- 335
           RDR  YV  VLNP++N+SQWK VKA+     ++   KENV        + V  + +T   
Sbjct: 244 RDRSGYVNAVLNPIENLSQWKAVKAKGRTTTQTQPRKENVIIASFSLESQVDDLSSTFSL 303

Query: 336 -------PENSIKKEVSVDASLSTWLVSSDNSTVDKVQSGSPCSISTVN----------- 377
                   E    +E++VDASLSTWL +S  +T     SG     +T++           
Sbjct: 304 NRKSRDETEKQRTQEIAVDASLSTWLSTSQTTT-----SGCSSVETTMSEKKKYSKLVQC 358

Query: 378 RDERPVLGALTVDDLKQXXXXXXXXXXXXHNREEAILGTVGSYWSS 423
            DERP+LGALT +++KQ             + E  I+GTVG YW+S
Sbjct: 359 HDERPILGALTAEEIKQFSATNSPRKSPSRSPESPIIGTVGGYWNS 404



>AT2G33400.1 | chr2:14153331-14154401 REVERSE LENGTH=273
          Length = 272

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 3/62 (4%)

Query: 295 VRPVLNPVQNMSQWKEVKAQAAPAKKSNKENVNSVPKVGATPENSIKKEVSVDASLSTWL 354
           V P+LNPV+N++QWK VKA+    K+  KENV       A P   + KE+ V+ SLS WL
Sbjct: 190 VAPLLNPVENLAQWKAVKARPVKVKRVMKENVEEDMDDQAKP---LLKEIIVNTSLSNWL 246

Query: 355 VS 356
            S
Sbjct: 247 AS 248



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.308    0.125    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,529,095
Number of extensions: 309503
Number of successful extensions: 905
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 898
Number of HSP's successfully gapped: 3
Length of query: 464
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 362
Effective length of database: 8,310,137
Effective search space: 3008269594
Effective search space used: 3008269594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 113 (48.1 bits)