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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0138500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.56 (0.0266) R2 : 0.159
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.521 (0.0561) R2dN8 : 0.206 R2N8 : 0.159
σ : 0.501
deviance : 115.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
106.47 0.485 3.52 0.0178 2.09 -2.33 3.67 -4.55 0.483 5.04 1.084 669 -- --
109.08 0.486 3.56 -0.0912 1.61 -1.85 -0.113 -- 0.429 5.02 1.088 686 -- --
113.52 0.5 3.56 0.0475 0.142 0.0229 -- -0.0834 0.525 0.939 1.084 669 -- --
108.94 0.486 3.56 -0.0738 1.45 -1.64 -- -- 0.461 4.97 1.281 679 -- --
112 0.493 3.56 0.156 -- -0.376 -- -0.555 0.563 -- 1.492 1293 -- --
113.57 0.5 3.57 0.0456 0.168 -- 0.0175 -- 0.524 0.675 -- -- -- --
113.57 0.499 3.57 0.0449 0.168 -- -- -- 0.524 0.715 -- -- -- --
112.72 0.494 3.55 0.129 -- -0.406 -- -- 0.578 -- 1.396 1255 -- --
109.04 0.486 3.56 -- 1.42 -1.59 -- -- 0.461 4.9 1.319 674 -- --
115.33 0.502 3.56 0.051 -- -- -- -- 0.527 -- -- -- -- --
113.62 0.499 3.57 -- 0.169 -- -- -- 0.519 0.727 -- -- -- --
111.68 0.492 3.58 -- -- -0.477 -- -- 0.486 -- 1.56 1266 -- --
115.4 0.501 3.56 -- -- -- -- -- 0.521 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 104.93 humidity 50.0 90 > th dose dependent rect. 19 12
2 105.09 radiation 1.0 720 < th dose dependent rect. 17 4
3 105.17 radiation 1.0 720 > th dose independent rect. 13 20
4 105.23 precipitation 0.1 720 < th dose independent rect. 21 22
5 105.23 precipitation 0.1 720 < th dose dependent rect. 21 22
6 105.24 radiation 1.0 720 < th dose independent rect. 17 4
7 105.31 radiation 1.0 720 > th dose independent rect. 11 22
8 105.35 radiation 1.0 720 < th dose dependent rect. 23 22
9 105.38 humidity 70.0 90 > th dose independent rect. 19 12
12 105.53 radiation 1.0 720 < th dose independent rect. 1 20
14 105.56 radiation 1.0 720 < th dose independent rect. 23 22
15 105.56 radiation 1.0 720 < th dose dependent rect. 1 20
18 105.77 precipitation 0.1 720 < th dose independent rect. 13 20
19 105.77 precipitation 0.1 720 < th dose dependent rect. 13 20
22 105.84 precipitation 0.1 720 < th dose independent rect. 4 15
23 105.84 precipitation 0.1 720 < th dose dependent rect. 4 15
28 105.98 radiation 40.0 720 < th dose independent rect. 21 12
29 105.99 radiation 10.0 90 < th dose independent rect. 19 12
33 106.05 radiation 1.0 720 > th dose independent rect. 15 18
35 106.10 radiation 30.0 90 < th dose dependent rect. 19 12
36 106.11 radiation 40.0 720 < th dose independent rect. 7 2
41 106.15 precipitation 0.1 720 < th dose independent rect. 21 12
42 106.15 precipitation 0.1 720 < th dose dependent rect. 21 12
45 106.17 radiation 1.0 720 < th dose dependent rect. 7 14
46 106.19 radiation 40.0 90 < th dose independent rect. 7 12
49 106.24 precipitation 0.1 720 < th dose independent rect. 15 18
50 106.24 precipitation 0.1 720 < th dose dependent rect. 15 18
60 106.34 precipitation 0.1 90 < th dose independent rect. 7 12
61 106.34 precipitation 0.1 90 < th dose dependent rect. 7 12
65 106.38 radiation 1.0 90 > th dose dependent rect. 7 2
66 106.38 radiation 1.0 720 < th dose dependent rect. 17 12
67 106.40 humidity 80.0 10 < th dose independent rect. 17 17
68 106.41 radiation 1.0 720 > th dose independent rect. 13 5
69 106.41 humidity 90.0 90 < th dose dependent rect. 7 2
70 106.42 humidity 80.0 10 < th dose independent rect. 6 4
74 106.46 radiation 1.0 720 < th dose dependent rect. 3 18
75 106.47 radiation 40.0 720 < th dose independent rect. 15 18
79 106.49 temperature 20.0 90 > th dose dependent rect. 7 2
80 106.50 radiation 30.0 720 < th dose dependent rect. 16 5
82 106.52 atmosphere 995.0 720 > th dose independent rect. 9 6
83 106.52 precipitation 0.1 720 < th dose independent rect. 7 16
84 106.52 humidity 80.0 10 < th dose independent rect. 15 19
85 106.52 precipitation 0.1 720 < th dose dependent rect. 7 16
90 106.54 temperature 10.0 90 > th dose independent rect. 7 12
91 106.54 temperature 10.0 90 > th dose independent rect. 19 12
92 106.54 temperature 30.0 90 < th dose independent rect. 19 12
93 106.54 humidity 50.0 90 > th dose independent rect. 19 12
95 106.54 atmosphere 995.0 90 > th dose independent rect. 19 12
96 106.54 atmosphere 1015.0 90 < th dose independent rect. 7 12
98 106.54 radiation 1.0 720 > th dose independent rect. 17 16
101 106.57 humidity 80.0 10 > th dose independent rect. 18 16
102 106.57 radiation 1.0 720 < th dose independent rect. 3 18
104 106.58 wind 9.0 90 < th dose independent rect. 19 12
107 106.59 humidity 90.0 90 < th dose independent rect. 7 2
109 106.60 temperature 10.0 1440 > th dose independent rect. 8 12
112 106.60 temperature 10.0 1440 > th dose independent rect. 20 12
115 106.60 temperature 30.0 1440 < th dose independent rect. 20 12
119 106.60 humidity 50.0 1440 > th dose independent rect. 20 12
124 106.60 atmosphere 995.0 1440 > th dose independent rect. 20 12
127 106.61 precipitation 0.1 720 < th dose independent rect. 11 8
129 106.61 precipitation 0.1 720 < th dose dependent rect. 11 8
130 106.62 radiation 10.0 90 > th dose independent rect. 17 16
134 106.63 humidity 80.0 10 < th dose independent rect. 13 21
141 106.68 wind 9.0 720 < th dose independent rect. 21 12
145 106.69 wind 9.0 720 < th dose dependent rect. 19 1
146 106.70 radiation 10.0 90 > th dose independent rect. 7 2
147 106.70 radiation 1.0 720 < th dose independent rect. 17 12
148 106.70 radiation 1.0 720 < th dose independent rect. 16 14
150 106.70 radiation 40.0 720 < th dose dependent rect. 16 15
155 106.73 temperature 25.0 10 > th dose independent rect. 7 3
157 106.73 atmosphere 1010.0 90 < th dose independent rect. 19 12
163 106.77 radiation 1.0 720 < th dose independent rect. 7 14
180 106.80 temperature 10.0 720 > th dose dependent rect. 7 1
182 106.81 temperature 25.0 90 > th dose dependent rect. 22 11
193 106.84 atmosphere 1000.0 720 > th dose independent rect. 19 2
197 106.86 temperature 20.0 10 > th dose dependent rect. 7 3
201 106.87 wind 9.0 90 < th dose dependent rect. 19 12
210 106.91 humidity 60.0 720 > th dose independent rect. 7 2
213 106.91 atmosphere 1015.0 720 < th dose independent rect. 9 12
216 106.92 wind 9.0 90 < th dose independent rect. 7 12
219 106.93 precipitation 0.1 720 < th dose independent rect. 7 9
221 106.93 precipitation 0.1 720 < th dose dependent rect. 7 9
230 106.98 radiation 20.0 720 < th dose independent rect. 16 15
242 107.07 radiation 1.0 720 > th dose independent rect. 4 14
254 107.08 radiation 1.0 720 < th dose independent rect. 1 17
256 107.08 humidity 50.0 720 > th dose dependent rect. 19 1
258 107.08 radiation 1.0 720 < th dose dependent rect. 7 22
259 107.09 precipitation 0.1 720 < th dose independent rect. 13 6
261 107.09 precipitation 0.1 720 < th dose dependent rect. 13 6
266 107.10 humidity 50.0 270 > th dose dependent rect. 17 12
272 107.12 precipitation 0.1 720 < th dose independent rect. 7 2
274 107.12 radiation 1.0 720 < th dose dependent sin 12 NA
275 107.12 precipitation 0.1 720 < th dose dependent rect. 7 2
281 107.13 precipitation 0.1 720 < th dose independent rect. 7 18
283 107.13 precipitation 0.1 720 < th dose dependent rect. 7 18
292 107.18 wind 9.0 720 < th dose independent rect. 7 2
293 107.18 temperature 10.0 720 > th dose independent rect. 7 2
296 107.18 atmosphere 995.0 720 > th dose independent rect. 7 2
297 107.18 atmosphere 1015.0 720 < th dose independent rect. 7 2
301 107.18 temperature 10.0 720 > th dose independent rect. 9 22
317 107.21 radiation 20.0 90 < th dose independent rect. 7 12
327 107.23 atmosphere 995.0 720 > th dose independent rect. 9 12
338 107.25 precipitation 0.1 30 < th dose independent rect. 9 23
341 107.25 precipitation 0.1 30 < th dose dependent rect. 9 23
346 107.27 radiation 1.0 720 > th dose independent sin 12 NA
347 107.27 atmosphere 1010.0 720 < th dose independent rect. 19 1
348 107.27 temperature 10.0 720 > th dose independent rect. 19 2
349 107.27 temperature 30.0 720 < th dose independent rect. 19 2
350 107.27 humidity 50.0 720 > th dose independent rect. 19 2
352 107.27 radiation 1.0 720 < th dose independent rect. 19 2
359 107.27 temperature 10.0 720 > th dose independent rect. 21 22
365 107.27 temperature 10.0 10 > th dose dependent rect. 23 11
368 107.28 radiation 1.0 720 < th dose dependent rect. 1 17
383 107.30 wind 9.0 720 < th dose independent rect. 19 2
396 107.30 radiation 10.0 90 < th dose independent rect. 19 14
407 107.32 humidity 90.0 10 < th dose dependent rect. 7 3
410 107.33 radiation 1.0 720 < th dose independent sin 12 NA
413 107.33 precipitation 0.1 720 < th dose independent rect. 11 22
417 107.33 precipitation 0.1 720 < th dose dependent rect. 11 22
445 107.39 atmosphere 995.0 720 > th dose independent rect. 9 22
462 107.40 atmosphere 995.0 90 > th dose independent rect. 9 22
477 107.44 atmosphere 1000.0 10 > th dose independent rect. 9 23
488 107.46 wind 9.0 90 < th dose independent rect. 9 22
493 107.47 wind 1.0 720 > th dose independent rect. 22 1
495 107.47 temperature 15.0 720 > th dose independent rect. 21 4
499 107.48 wind 1.0 270 > th dose independent rect. 13 12
506 107.49 temperature 30.0 720 < th dose independent rect. 7 1
515 107.50 radiation 40.0 90 < th dose independent rect. 7 2
518 107.51 wind 5.0 90 < th dose independent rect. 7 2
519 107.51 humidity 60.0 90 > th dose independent rect. 7 2
520 107.51 precipitation 0.1 90 < th dose independent rect. 7 2
523 107.51 precipitation 0.1 90 < th dose dependent rect. 7 2
529 107.52 precipitation 0.1 90 < th dose independent rect. 19 12
535 107.52 radiation 40.0 90 < th dose dependent rect. 7 12
536 107.52 precipitation 0.1 90 < th dose dependent rect. 19 12
549 107.54 wind 9.0 720 < th dose independent rect. 21 4
557 107.55 wind 1.0 90 > th dose independent rect. 7 2
565 107.56 temperature 10.0 90 > th dose independent rect. 7 2
568 107.56 atmosphere 995.0 90 > th dose independent rect. 7 2
569 107.56 atmosphere 1015.0 90 < th dose independent rect. 7 2
570 107.56 temperature 10.0 720 > th dose independent rect. 9 4
571 107.56 atmosphere 995.0 720 > th dose independent rect. 9 4
572 107.56 atmosphere 1015.0 720 < th dose independent rect. 9 4
573 107.56 atmosphere 995.0 720 > th dose independent rect. 24 15
574 107.56 temperature 10.0 720 > th dose independent rect. 13 20
576 107.56 temperature 10.0 90 > th dose independent rect. 9 22
578 107.57 atmosphere 1005.0 30 > th dose independent rect. 8 1
581 107.57 radiation 1.0 720 < th dose dependent rect. 21 4
588 107.58 temperature 10.0 1440 > th dose independent rect. 9 1
591 107.58 atmosphere 995.0 1440 > th dose independent rect. 9 1
594 107.58 atmosphere 1015.0 1440 < th dose independent rect. 9 1
596 107.58 temperature 20.0 720 > th dose independent rect. 9 4
598 107.58 temperature 30.0 720 < th dose independent rect. 21 4
599 107.58 humidity 50.0 720 > th dose independent rect. 21 4
602 107.58 atmosphere 995.0 720 > th dose independent rect. 21 4
603 107.58 radiation 1.0 720 < th dose independent rect. 21 4
608 107.58 precipitation 0.1 720 < th dose independent rect. 9 4
612 107.58 temperature 10.0 720 > th dose independent rect. 1 20
621 107.58 precipitation 0.1 720 < th dose dependent rect. 9 4
643 107.59 humidity 90.0 10 < th dose dependent rect. 23 11
654 107.60 atmosphere 1000.0 30 > th dose dependent rect. 8 1
659 107.61 radiation 1.0 720 > th dose independent rect. 7 2
664 107.61 radiation 1.0 90 > th dose dependent rect. 17 16
671 107.62 wind 1.0 30 > th dose dependent rect. 8 1
679 107.63 precipitation 0.1 720 < th dose independent rect. 21 4
680 107.63 radiation 20.0 720 < th dose independent rect. 15 6
684 107.63 precipitation 0.1 720 < th dose dependent rect. 21 4
698 107.65 radiation 1.0 720 < th dose independent rect. 7 22
710 107.66 temperature 30.0 30 < th dose independent rect. 8 1
722 107.66 radiation 1.0 720 < th dose dependent no NA NA
731 107.68 radiation 1.0 720 > th dose independent rect. 9 4
737 107.68 wind 9.0 30 < th dose dependent rect. 8 1
772 107.71 wind 9.0 720 < th dose independent rect. 13 20
779 107.72 wind 9.0 720 < th dose independent rect. 9 4
780 107.72 wind 1.0 90 > th dose independent rect. 7 12
781 107.72 atmosphere 1015.0 720 < th dose independent rect. 1 20
785 107.72 humidity 50.0 30 > th dose dependent rect. 8 1
804 107.73 precipitation 0.1 720 < th dose independent rect. 13 12
810 107.73 precipitation 0.1 720 < th dose dependent rect. 13 12
816 107.74 radiation 40.0 30 < th dose dependent rect. 8 1
832 107.75 radiation 1.0 720 > th dose independent rect. 17 23
841 107.77 humidity 80.0 10 > th dose independent rect. 14 20
846 107.78 wind 1.0 720 > th dose independent rect. 19 2
884 107.82 radiation 1.0 720 > th dose independent no NA NA
885 107.82 wind 9.0 720 < th dose independent rect. 21 6
935 107.83 atmosphere 1015.0 30 < th dose dependent rect. 8 1
944 107.84 wind 9.0 720 < th dose independent rect. 9 12
973 107.86 temperature 10.0 720 > th dose independent rect. 9 6
974 107.86 atmosphere 1015.0 720 < th dose independent rect. 9 6
975 107.86 temperature 10.0 720 > th dose independent rect. 15 18
988 107.88 temperature 10.0 720 > th dose independent rect. 21 6
989 107.88 temperature 30.0 720 < th dose independent rect. 21 6
990 107.88 humidity 50.0 720 > th dose independent rect. 21 6
993 107.88 atmosphere 995.0 720 > th dose independent rect. 21 6
994 107.88 radiation 1.0 720 < th dose independent rect. 21 6