BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0138500 Os03g0138500|AK102410
         (406 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04030.1  | chr1:1040597-1042313 FORWARD LENGTH=435             70   3e-12
AT5G44040.1  | chr5:17719896-17721348 REVERSE LENGTH=417           62   5e-10

>AT1G04030.1 | chr1:1040597-1042313 FORWARD LENGTH=435
          Length = 434

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 77/179 (43%), Gaps = 27/179 (15%)

Query: 232 DANPVLSSVENLTQWKDXXXXXXXXXXXXXXSD-------KENRTTANLLPEPAIPAKKR 284
           D   VL+ VENLTQWK                +       +E R +++   +P I     
Sbjct: 216 DGQGVLNPVENLTQWKSAKSKGRTKQKQSQKENSNFIADQEEKRDSSSFGTDPQIDDITL 275

Query: 285 EWQVVCSDYSPSTPSKQEVSVDASLSTWLGSSGT-PESNSVRSFS--------------- 328
             +  C    P     QE++VDASLSTWL +S +  E NS   ++               
Sbjct: 276 SVKPKCR-IEPKKLRNQELAVDASLSTWLSTSESGSECNSASMYTLTPEKLKSTSCYSKP 334

Query: 329 -PISREDRPILGALTVEDIKIXXXXXXXXXXXXXXXXXDDMPILGTVGAYWNCSSKAGD 386
             I+ +DRP+L ALT+EDIK                  D+ PI+GTVG YW   SKA D
Sbjct: 335 LRINHDDRPVLCALTLEDIK--QFSATSTPRKSPSKSPDETPIIGTVGGYWGNRSKAID 391



>AT5G44040.1 | chr5:17719896-17721348 REVERSE LENGTH=417
          Length = 416

 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 77/173 (44%), Gaps = 31/173 (17%)

Query: 233 ANPVLSSVENLTQWKDXXXXXXXXXXXXXXSDKENRTTANLLPEPAIPAKKREWQVVCSD 292
            N VL+ +ENL+QWK                 KEN   A+   E  +         + S 
Sbjct: 250 VNAVLNPIENLSQWK--AVKAKGRTTTQTQPRKENVIIASFSLESQVDD-------LSST 300

Query: 293 YSPSTPSK--------QEVSVDASLSTWLGSSGTPES---------NSVRSFSPISR--E 333
           +S +  S+        QE++VDASLSTWL +S T  S         +  + +S + +  +
Sbjct: 301 FSLNRKSRDETEKQRTQEIAVDASLSTWLSTSQTTTSGCSSVETTMSEKKKYSKLVQCHD 360

Query: 334 DRPILGALTVEDIKIXXXXXXXXXXXXXXXXXDDMPILGTVGAYWNCSSKAGD 386
           +RPILGALT E+IK                   + PI+GTVG YWN  S A +
Sbjct: 361 ERPILGALTAEEIK---QFSATNSPRKSPSRSPESPIIGTVGGYWNSHSMATN 410



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.129    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,936,767
Number of extensions: 172721
Number of successful extensions: 368
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 2
Length of query: 406
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 305
Effective length of database: 8,337,553
Effective search space: 2542953665
Effective search space used: 2542953665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)