BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0509400 Os04g0509400|J053024K22
(109 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0509400 Cupin, RmlC-type domain containing protein 224 1e-59
Os02g0620400 Cupin, RmlC-type domain containing protein 172 6e-44
Os04g0445200 Protein of unknown function DUF861, cupin_3 do... 124 2e-29
>Os04g0509400 Cupin, RmlC-type domain containing protein
Length = 109
Score = 224 bits (571), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MGTTSSPDTMAAAAGPSLSITVEKNPPEARLLQLGIKSWPKWGCPPGKFPLKFDARLTCY 60
MGTTSSPDTMAAAAGPSLSITVEKNPPEARLLQLGIKSWPKWGCPPGKFPLKFDARLTCY
Sbjct: 1 MGTTSSPDTMAAAAGPSLSITVEKNPPEARLLQLGIKSWPKWGCPPGKFPLKFDARLTCY 60
Query: 61 LLKGRVRASVKGTGRCVEFGAGDLVVFPKGLSCTWDVVVGIDKHYNFDS 109
LLKGRVRASVKGTGRCVEFGAGDLVVFPKGLSCTWDVVVGIDKHYNFDS
Sbjct: 61 LLKGRVRASVKGTGRCVEFGAGDLVVFPKGLSCTWDVVVGIDKHYNFDS 109
>Os02g0620400 Cupin, RmlC-type domain containing protein
Length = 113
Score = 172 bits (435), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 94/112 (83%), Gaps = 3/112 (2%)
Query: 1 MGTTSSPDTMAA---AAGPSLSITVEKNPPEARLLQLGIKSWPKWGCPPGKFPLKFDARL 57
M ++S+PDTM G +LSI VE+NPPE+RLLQLG+KSWPKWGCP GKFP+KFDAR
Sbjct: 1 MASSSNPDTMDTDPPGGGGTLSIAVERNPPESRLLQLGVKSWPKWGCPTGKFPVKFDARE 60
Query: 58 TCYLLKGRVRASVKGTGRCVEFGAGDLVVFPKGLSCTWDVVVGIDKHYNFDS 109
TCYL+KG+VRA +KG+ CVEFGAGDLVVFPKGLSCTWDV+ +DK+Y FDS
Sbjct: 61 TCYLVKGKVRAHIKGSSECVEFGAGDLVVFPKGLSCTWDVLAAVDKYYKFDS 112
>Os04g0445200 Protein of unknown function DUF861, cupin_3 domain containing
protein
Length = 154
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Query: 12 AAAGPSLSITVEKNPPEARLLQLGIKSWPKWGCPPGKFPLKFDARLTCYLLKGRVRASVK 71
A A L + VE+NPPE+RL +LG++ WPKWGC KFP + A+ TCYLL+G+V+
Sbjct: 57 AMATEKLGVRVERNPPESRLSELGVREWPKWGCEKSKFPWTYSAKETCYLLQGKVKVFPD 116
Query: 72 GTGR-CVEFGAGDLVVFPKGLSCTWDVVVGIDKHYNFD 108
G G VE AGDLVVFPKG+SCTWDV +DKHY F+
Sbjct: 117 GAGEDFVEIAAGDLVVFPKGMSCTWDVAEAVDKHYKFE 154
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,633,537
Number of extensions: 190452
Number of successful extensions: 390
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 3
Length of query: 109
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 32
Effective length of database: 13,015,323
Effective search space: 416490336
Effective search space used: 416490336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)