Os04g0509400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupin, RmlC-type domain containing protein.
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Os04g0509400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupin, RmlC-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.6 | 0.537 | 3.89 | 0.592 | 0.417 | -1.51 | 0.488 | -0.355 | -0.0253 | 13.7 | 15.2 | 12 | -- | -- |
| 130.67 | 0.532 | 3.89 | 0.644 | 0.412 | -1.51 | 0.397 | -- | -0.0131 | 13.7 | 15.2 | 13 | -- | -- |
| 131.29 | 0.534 | 3.88 | 0.679 | 0.405 | -1.54 | -- | 0.189 | -0.00652 | 13.6 | 11.9 | 12 | -- | -- |
| 131.27 | 0.534 | 3.89 | 0.651 | 0.409 | -1.49 | -- | -- | -0.0153 | 13.6 | 15.2 | 12 | -- | -- |
| 138.04 | 0.547 | 3.9 | 0.587 | -- | -1.07 | -- | 0.269 | -0.0771 | -- | 13.03 | 21 | -- | -- |
| 153.69 | 0.581 | 3.94 | 0.353 | 0.0924 | -- | -0.181 | -- | -0.232 | 5.88 | -- | -- | -- | -- |
| 153.75 | 0.581 | 3.94 | 0.352 | 0.0935 | -- | -- | -- | -0.231 | 6.67 | -- | -- | -- | -- |
| 138.1 | 0.547 | 3.91 | 0.551 | -- | -1.02 | -- | -- | -0.0855 | -- | 15.2 | 14 | -- | -- |
| 141.48 | 0.554 | 3.91 | -- | 0.307 | -1.21 | -- | -- | -0.125 | 13.3 | 11.4 | 12 | -- | -- |
| 154.21 | 0.58 | 3.94 | 0.354 | -- | -- | -- | -- | -0.229 | -- | -- | -- | -- | -- |
| 157.02 | 0.586 | 3.94 | -- | 0.098 | -- | -- | -- | -0.27 | 6.46 | -- | -- | -- | -- |
| 145.64 | 0.562 | 3.92 | -- | -- | -0.884 | -- | -- | -0.167 | -- | 10.98 | 12 | -- | -- |
| 157.52 | 0.586 | 3.95 | -- | -- | -- | -- | -- | -0.268 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.59 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 19 | 128.49 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 24 | 128.81 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 29 | 129.04 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 30 | 129.06 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 36 | 129.16 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 38 | 129.18 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 39 | 129.20 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 40 | 129.20 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 42 | 129.25 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 46 | 129.31 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 48 | 129.32 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 49 | 129.32 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 71 | 129.49 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 90 | 129.65 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 94 | 129.67 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 96 | 129.67 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 100 | 129.71 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 122 | 129.82 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 129 | 129.86 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 133 | 129.89 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 177 | 130.11 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 21 | 10 |
| 178 | 130.12 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 205 | 130.21 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 7 |
| 262 | 130.40 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 285 | 130.47 | temperature | 25.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 305 | 130.53 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 345 | 130.65 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 367 | 130.71 | temperature | 15.0 | 10 | > th | dose dependent | no | NA | NA |
| 392 | 130.77 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 406 | 130.80 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 454 | 130.94 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 500 | 131.05 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 535 | 131.10 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 565 | 131.17 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 670 | 131.32 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 679 | 131.34 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 700 | 131.36 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 22 |
| 928 | 131.70 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 955 | 131.74 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 11 |