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Os02g0620400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupin, RmlC-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.42 (0.0285) R2 : 0.746
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.21 (0.0691) R2dC : 0.579 R2C : 0.622
β3 : -1.71 (0.117) R2dE : 0.12 R2E : 0.163
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0979 (0.0599) R2dN8 : 0.00193 R2N8 : 9.26e-05
σ : 0.533
deviance : 131.16
__
_____
C
peak time of C : 10.2
E
wheather : radiation
threshold : 0.85
memory length : 79
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 20.6
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
124.77 0.525 9.42 0.164 2.21 -1.76 -1.02 1.2 0.109 10.2 0.9575 80 20.7 --
126.11 0.523 9.42 0.18 2.21 -1.68 -0.994 -- 0.119 10.3 0.8546 76 20.6 --
128.87 0.529 9.42 0.13 2.21 -1.77 -- 1.43 0.107 10.2 0.95 79 20.8 --
130.87 0.533 9.42 0.102 2.21 -1.71 -- -- 0.104 10.2 0.86 79 20.6 --
177.04 0.623 9.46 0.105 -- -2.07 -- 0.981 0.159 -- 4.82 38 6.66 --
161.94 0.597 9.41 0.148 2.35 -- -1.07 -- 0.183 11.4 -- -- -- --
166.83 0.605 9.41 0.104 2.35 -- -- -- 0.179 11.4 -- -- -- --
166.83 0.602 9.46 0.104 -- -2.34 -- -- 0.179 -- 87.91 37 6.93 --
131.16 0.533 9.42 -- 2.21 -1.71 -- -- 0.0979 10.2 0.85 79 20.6 --
514.38 1.06 9.47 0.0434 -- -- -- -- 0.155 -- -- -- -- --
167.12 0.605 9.41 -- 2.35 -- -- -- 0.167 11.4 -- -- -- --
167.12 0.602 9.46 -- -- -2.34 -- -- 0.167 -- 126.1 35 6.91 --
514.43 1.06 9.47 -- -- -- -- -- 0.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 125.55 radiation 1.0 90 < th dose independent sin 3 NA
2 125.66 radiation 1.0 90 > th dose independent sin 3 NA
5 126.74 radiation 1.0 90 < th dose dependent sin 3 NA
12 129.62 radiation 1.0 90 > th dose independent rect. 4 11
24 129.75 radiation 1.0 90 < th dose independent rect. 2 16
35 130.88 temperature 10.0 270 > th dose dependent rect. 17 7
36 131.00 radiation 1.0 90 < th dose dependent rect. 2 16
41 131.46 radiation 10.0 10 < th dose dependent rect. 23 23
79 133.07 radiation 10.0 10 < th dose dependent rect. 2 15
94 133.57 radiation 1.0 270 < th dose dependent rect. 23 19
99 133.78 radiation 1.0 90 < th dose independent rect. 2 8
104 133.81 radiation 1.0 90 < th dose independent rect. 2 6
116 134.05 radiation 1.0 270 < th dose independent rect. 23 19
153 135.01 radiation 40.0 10 < th dose dependent rect. 13 17
158 135.20 radiation 1.0 90 < th dose dependent rect. 2 8
159 135.23 radiation 1.0 90 < th dose dependent rect. 2 6
213 135.84 atmosphere 995.0 270 > th dose dependent rect. 23 6
226 136.03 radiation 1.0 270 < th dose dependent rect. 23 7
247 136.10 radiation 1.0 270 < th dose independent rect. 23 7
277 136.54 atmosphere 995.0 270 > th dose dependent rect. 1 2
279 136.58 precipitation 0.1 270 < th dose independent rect. 3 22
281 136.58 precipitation 0.1 270 < th dose dependent rect. 3 22
293 136.71 temperature 10.0 10 > th dose dependent rect. 6 20
306 136.85 precipitation 0.1 270 < th dose independent rect. 5 18
307 136.85 precipitation 0.1 270 < th dose dependent rect. 5 18
350 137.10 temperature 10.0 270 > th dose independent rect. 23 6
351 137.10 temperature 30.0 270 < th dose independent rect. 23 6
352 137.10 humidity 50.0 270 > th dose independent rect. 23 6
355 137.10 atmosphere 995.0 270 > th dose independent rect. 23 6
359 137.10 temperature 10.0 270 > th dose independent rect. 5 18
362 137.11 wind 9.0 270 < th dose independent rect. 23 6
371 137.22 atmosphere 1015.0 270 < th dose independent rect. 5 18
390 137.36 wind 9.0 270 < th dose independent rect. 13 15
401 137.47 temperature 10.0 270 > th dose independent rect. 1 2
403 137.47 temperature 30.0 270 < th dose independent rect. 1 2
404 137.47 humidity 50.0 270 > th dose independent rect. 1 2
407 137.47 atmosphere 995.0 270 > th dose independent rect. 1 2
408 137.47 atmosphere 1010.0 270 < th dose independent rect. 1 2
410 137.47 radiation 1.0 270 < th dose independent rect. 1 2
415 137.47 temperature 10.0 270 > th dose independent rect. 3 22
416 137.47 radiation 1.0 270 < th dose dependent rect. 1 2
421 137.48 wind 9.0 270 < th dose independent rect. 1 2
422 137.48 radiation 1.0 90 < th dose independent rect. 23 22
424 137.49 precipitation 0.1 270 < th dose independent rect. 1 2
425 137.49 precipitation 0.1 270 < th dose dependent rect. 1 2
445 137.73 temperature 10.0 270 > th dose dependent rect. 1 2
451 137.80 precipitation 0.1 270 < th dose independent rect. 23 6
453 137.80 precipitation 0.1 270 < th dose dependent rect. 23 6
458 137.82 radiation 30.0 90 < th dose independent rect. 13 16
474 137.98 temperature 15.0 10 > th dose independent rect. 6 20
477 138.01 humidity 50.0 270 > th dose independent rect. 4 9
482 138.03 atmosphere 995.0 10 > th dose dependent rect. 2 4
485 138.06 precipitation 0.1 270 < th dose independent rect. 4 9
488 138.06 precipitation 0.1 270 < th dose dependent rect. 4 9
495 138.11 humidity 50.0 270 > th dose dependent rect. 23 6
505 138.21 atmosphere 995.0 270 > th dose independent rect. 5 18
508 138.23 atmosphere 1015.0 270 < th dose independent rect. 23 6
524 138.32 humidity 50.0 270 > th dose dependent rect. 1 2
527 138.33 precipitation 0.1 10 < th dose independent rect. 6 20
529 138.33 precipitation 0.1 10 < th dose dependent rect. 6 20
540 138.41 temperature 10.0 270 > th dose independent rect. 4 9
541 138.41 atmosphere 995.0 270 > th dose independent rect. 4 9
542 138.41 atmosphere 1015.0 270 < th dose independent rect. 4 9
543 138.41 temperature 10.0 270 > th dose independent rect. 13 15
583 138.67 atmosphere 1000.0 10 > th dose independent rect. 2 4
592 138.72 humidity 80.0 10 > th dose independent rect. 2 4
593 138.72 wind 1.0 270 > th dose independent rect. 5 18
600 138.75 wind 9.0 270 < th dose independent rect. 5 18
604 138.77 wind 1.0 270 > th dose independent rect. 17 7
616 138.85 wind 9.0 10 < th dose independent rect. 2 4
617 138.85 temperature 10.0 10 > th dose independent rect. 2 4
619 138.85 temperature 30.0 10 < th dose independent rect. 2 4
620 138.85 humidity 50.0 10 > th dose independent rect. 2 4
624 138.85 atmosphere 1010.0 10 < th dose independent rect. 2 4
626 138.85 radiation 20.0 10 < th dose independent rect. 2 4
636 138.88 wind 9.0 90 < th dose independent rect. 15 14
671 138.95 temperature 10.0 270 > th dose dependent rect. 24 5
697 139.02 temperature 20.0 270 > th dose independent rect. 18 5
709 139.07 wind 9.0 270 < th dose independent rect. 4 9
714 139.09 wind 1.0 270 > th dose independent rect. 18 5
738 139.16 wind 9.0 90 < th dose independent rect. 3 2
739 139.16 temperature 10.0 90 > th dose independent rect. 3 2
741 139.16 temperature 30.0 90 < th dose independent rect. 3 2
742 139.16 humidity 50.0 90 > th dose independent rect. 3 2
745 139.16 atmosphere 995.0 90 > th dose independent rect. 3 2
746 139.16 atmosphere 1010.0 90 < th dose independent rect. 3 2
751 139.16 wind 9.0 90 < th dose independent rect. 1 5
752 139.16 wind 9.0 270 < th dose independent rect. 24 17
756 139.16 temperature 15.0 10 > th dose dependent rect. 20 6
759 139.17 humidity 50.0 10 > th dose dependent rect. 2 4
760 139.18 temperature 10.0 90 > th dose independent rect. 1 5
762 139.18 temperature 30.0 90 < th dose independent rect. 1 5
763 139.18 humidity 50.0 90 > th dose independent rect. 1 5
767 139.18 atmosphere 1010.0 90 < th dose independent rect. 1 5
784 139.21 radiation 30.0 90 < th dose independent rect. 15 14
789 139.24 atmosphere 995.0 270 > th dose independent rect. 17 7
794 139.26 wind 9.0 270 < th dose dependent rect. 1 2
798 139.27 atmosphere 1015.0 10 < th dose independent rect. 6 20
839 139.33 temperature 10.0 10 > th dose dependent rect. 2 4
863 139.37 precipitation 0.1 10 < th dose independent rect. 2 4
865 139.37 precipitation 0.1 10 < th dose dependent rect. 2 4
870 139.39 precipitation 0.1 90 < th dose independent rect. 3 2
871 139.39 precipitation 0.1 90 < th dose independent rect. 1 5
873 139.39 precipitation 0.1 90 < th dose dependent rect. 3 2
876 139.39 precipitation 0.1 90 < th dose dependent rect. 1 5
901 139.45 wind 9.0 270 < th dose independent rect. 23 19
920 139.46 atmosphere 995.0 90 > th dose independent rect. 15 14
943 139.50 humidity 50.0 90 > th dose dependent rect. 3 2
949 139.53 temperature 10.0 90 > th dose independent rect. 15 14
963 139.58 radiation 10.0 270 < th dose independent rect. 17 7
966 139.60 wind 9.0 1440 < th dose independent rect. 3 4
967 139.60 temperature 10.0 1440 > th dose independent rect. 3 4
970 139.60 temperature 30.0 1440 < th dose independent rect. 3 4
974 139.60 humidity 50.0 1440 > th dose independent rect. 3 4
979 139.60 atmosphere 995.0 1440 > th dose independent rect. 3 4
980 139.60 radiation 40.0 1440 < th dose independent rect. 3 4
984 139.60 temperature 10.0 1440 > th dose independent rect. 7 20