BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0504600 Os04g0504600|012-039-E04
         (128 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0504600  Conserved hypothetical protein                      258   7e-70
Os04g0386600  Isocitrate lyase and phosphorylmutase family p...    78   2e-15

>Os04g0504600 Conserved hypothetical protein
          Length = 128

 Score =  258 bits (659), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   IIGYYDNTSEASSPGDAKSRTETPQEPVIDILPQLYDLGSTGGRGPSAGMWSRTLRLRIT 60
           IIGYYDNTSEASSPGDAKSRTETPQEPVIDILPQLYDLGSTGGRGPSAGMWSRTLRLRIT
Sbjct: 1   IIGYYDNTSEASSPGDAKSRTETPQEPVIDILPQLYDLGSTGGRGPSAGMWSRTLRLRIT 60

Query: 61  GRDGVQKIDARIPAGFLEGMTKVIPGLAGANIMERLRNAPIDSENPQNGQILLDFEDAMG 120
           GRDGVQKIDARIPAGFLEGMTKVIPGLAGANIMERLRNAPIDSENPQNGQILLDFEDAMG
Sbjct: 61  GRDGVQKIDARIPAGFLEGMTKVIPGLAGANIMERLRNAPIDSENPQNGQILLDFEDAMG 120

Query: 121 DRIQVFIE 128
           DRIQVFIE
Sbjct: 121 DRIQVFIE 128



>Os04g0386600 Isocitrate lyase and phosphorylmutase family protein
          Length = 389

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 4/75 (5%)

Query: 54  TLRLRITGRDGVQKIDARIPAGFLEGMTKVIPGLAGANIMERLRNAPIDSENPQNGQILL 113
            LRL+IT + G QKI+  IPAG LE ++K IPGLAG N+ E L+ A    +  Q G++LL
Sbjct: 319 VLRLKITEKSGTQKINEGIPAGILEKISKAIPGLAGVNLTEILQGA----DQSQKGKLLL 374

Query: 114 DFEDAMGDRIQVFIE 128
           D EDA GDRIQV IE
Sbjct: 375 DREDATGDRIQVSIE 389



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,791,013
Number of extensions: 205938
Number of successful extensions: 324
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 2
Length of query: 128
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 39
Effective length of database: 12,388,755
Effective search space: 483161445
Effective search space used: 483161445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 150 (62.4 bits)