Os04g0504600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0504600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.01 | 0.393 | 8.25 | 0.66 | 0.851 | -0.766 | -0.258 | -1.15 | -0.493 | 21.6 | 58.99 | 268 | -- | -- |
| 72.26 | 0.396 | 8.25 | 0.592 | 0.777 | -0.948 | -0.392 | -- | -0.503 | 21.9 | 56 | 314 | -- | -- |
| 70.13 | 0.39 | 8.25 | 0.674 | 0.883 | -0.717 | -- | -1.17 | -0.483 | 21.5 | 58.95 | 240 | -- | -- |
| 72.8 | 0.397 | 8.25 | 0.614 | 0.786 | -0.9 | -- | -- | -0.497 | 21.6 | 56 | 319 | -- | -- |
| 87.33 | 0.435 | 8.24 | 0.591 | -- | -1.39 | -- | 0.0118 | -0.544 | -- | 60.89 | 601 | -- | -- |
| 83.88 | 0.429 | 8.25 | 0.633 | 1.1 | -- | 0.285 | -- | -0.464 | 19.7 | -- | -- | -- | -- |
| 84.09 | 0.429 | 8.25 | 0.625 | 1.1 | -- | -- | -- | -0.464 | 19.7 | -- | -- | -- | -- |
| 86.92 | 0.434 | 8.23 | 0.586 | -- | -1.49 | -- | -- | -0.529 | -- | 57.32 | 617 | -- | -- |
| 82.44 | 0.423 | 8.26 | -- | 0.784 | -1.01 | -- | -- | -0.556 | 21.6 | 38.69 | 317 | -- | -- |
| 148.86 | 0.57 | 8.22 | 0.611 | -- | -- | -- | -- | -0.48 | -- | -- | -- | -- | -- |
| 94.39 | 0.454 | 8.26 | -- | 1.09 | -- | -- | -- | -0.534 | 19.8 | -- | -- | -- | -- |
| 95.45 | 0.455 | 8.24 | -- | -- | -1.56 | -- | -- | -0.567 | -- | 42.02 | 618 | -- | -- |
| 158.71 | 0.588 | 8.24 | -- | -- | -- | -- | -- | -0.548 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.49 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 12 |
| 2 | 66.67 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 20 |
| 5 | 66.73 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 16 |
| 9 | 66.82 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 12 |
| 16 | 66.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 71 | 68.12 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 80 | 68.21 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 116 | 68.58 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 147 | 68.78 | temperature | 10 | 90 | > th | dose dependent | sin | 22 | NA |
| 161 | 68.91 | temperature | 15 | 10 | > th | dose dependent | sin | 21 | NA |
| 181 | 69.05 | temperature | 25 | 90 | > th | dose dependent | sin | 22 | NA |
| 188 | 69.08 | humidity | 50 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 201 | 69.16 | temperature | 25 | 10 | > th | dose dependent | sin | 21 | NA |
| 213 | 69.20 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 15 |
| 231 | 69.26 | humidity | 90 | 720 | < th | dose dependent | rect. | 9 | 6 |
| 298 | 69.56 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 333 | 69.69 | humidity | 60 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 336 | 69.72 | humidity | 70 | 90 | > th | dose independent | rect. | 13 | 22 |
| 353 | 69.79 | humidity | 70 | 720 | > th | dose independent | rect. | 21 | 18 |
| 358 | 69.79 | humidity | 90 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 360 | 69.80 | humidity | 50 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 397 | 69.96 | radiation | 1 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 411 | 69.99 | humidity | 60 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 414 | 70.02 | humidity | 70 | 270 | > th | dose independent | rect. | 10 | 22 |
| 416 | 70.02 | humidity | 60 | 270 | > th | dose dependent | no | NA | NA |
| 431 | 70.06 | radiation | 40 | 720 | < th | dose independent | rect. | 21 | 16 |
| 436 | 70.06 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 438 | 70.08 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 441 | 70.10 | humidity | 80 | 720 | < th | dose independent | rect. | 8 | 7 |
| 442 | 70.10 | humidity | 70 | 90 | > th | dose independent | rect. | 21 | 23 |
| 466 | 70.16 | humidity | 60 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 473 | 70.20 | humidity | 50 | 720 | > th | dose dependent | sin | 3 | NA |
| 475 | 70.21 | humidity | 70 | 720 | > th | dose independent | rect. | 1 | 14 |
| 476 | 70.21 | humidity | 70 | 90 | > th | dose independent | rect. | 15 | 20 |
| 484 | 70.22 | humidity | 50 | 720 | > th | dose dependent | rect. | 6 | 9 |
| 487 | 70.22 | humidity | 50 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 501 | 70.25 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 503 | 70.25 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 22 |
| 534 | 70.35 | radiation | 40 | 720 | < th | dose independent | sin | 8 | NA |
| 536 | 70.35 | humidity | 90 | 90 | < th | dose dependent | rect. | 9 | 21 |
| 564 | 70.42 | humidity | 70 | 90 | > th | dose independent | rect. | 1 | 23 |
| 580 | 70.45 | humidity | 70 | 720 | > th | dose independent | sin | 4 | NA |
| 649 | 70.59 | temperature | 30 | 90 | < th | dose independent | rect. | 6 | 13 |
| 682 | 70.65 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 2 |
| 723 | 70.73 | humidity | 90 | 90 | < th | dose dependent | rect. | 9 | 12 |
| 730 | 70.75 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 18 |
| 783 | 70.83 | humidity | 70 | 90 | > th | dose independent | rect. | 15 | 23 |
| 809 | 70.87 | humidity | 80 | 270 | < th | dose independent | sin | 0 | NA |
| 820 | 70.88 | radiation | 40 | 270 | < th | dose dependent | rect. | 12 | 22 |
| 825 | 70.89 | humidity | 70 | 90 | > th | dose independent | no | NA | NA |
| 826 | 70.89 | humidity | 70 | 720 | > th | dose independent | rect. | 5 | 9 |
| 846 | 70.93 | radiation | 40 | 720 | < th | dose dependent | rect. | 21 | 17 |
| 906 | 71.01 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 12 |
| 945 | 71.06 | humidity | 70 | 90 | < th | dose independent | sin | 22 | NA |
| 990 | 71.12 | humidity | 70 | 90 | < th | dose independent | rect. | 19 | 23 |