Os04g0386600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Isocitrate lyase and phosphorylmutase family protein.
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Os04g0386600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Isocitrate lyase and phosphorylmutase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.92 | 0.278 | 12.7 | -0.594 | 0.72 | 0.798 | -0.601 | -1.22 | -0.204 | 20.6 | 9.682 | 3980 | -- | -- |
| 36.03 | 0.28 | 12.6 | -0.47 | 0.73 | 0.891 | -0.604 | -- | -0.252 | 20.7 | 10.94 | 10937 | -- | -- |
| 36.06 | 0.28 | 12.7 | -0.59 | 0.715 | 0.795 | -- | -1.32 | -0.209 | 20.6 | 9.859 | 3894 | -- | -- |
| 37.31 | 0.284 | 12.6 | -0.465 | 0.731 | 0.89 | -- | -- | -0.249 | 20.7 | 10.6 | 10936 | -- | -- |
| 49.19 | 0.327 | 12.6 | -0.597 | -- | 1.42 | -- | -1.94 | -0.268 | -- | -3.078 | 653 | -- | -- |
| 49 | 0.328 | 12.6 | 0.0613 | 0.744 | -- | -0.581 | -- | 0.0353 | 20.9 | -- | -- | -- | -- |
| 50.14 | 0.332 | 12.6 | 0.0808 | 0.745 | -- | -- | -- | 0.0355 | 20.9 | -- | -- | -- | -- |
| 52.08 | 0.336 | 12.6 | -0.256 | -- | 1.38 | -- | -- | -0.177 | -- | 11.8 | 664 | -- | -- |
| 39.32 | 0.292 | 12.6 | -- | 0.728 | 0.69 | -- | -- | -0.0739 | 20.6 | 7.263 | 4007 | -- | -- |
| 81.82 | 0.423 | 12.5 | 0.0807 | -- | -- | -- | -- | 0.0302 | -- | -- | -- | -- | -- |
| 50.31 | 0.332 | 12.6 | -- | 0.745 | -- | -- | -- | 0.0265 | 20.9 | -- | -- | -- | -- |
| 53.59 | 0.341 | 12.6 | -- | -- | 1.24 | -- | -- | -0.136 | -- | 15.47 | 657 | -- | -- |
| 81.99 | 0.423 | 12.6 | -- | -- | -- | -- | -- | 0.0213 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.60 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 31.61 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 4 | 31.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 42 | 32.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 16 |
| 50 | 32.58 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 63 | 32.66 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 91 | 32.93 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 118 | 33.11 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 146 | 33.25 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 150 | 33.26 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 9 |
| 160 | 33.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 7 |
| 179 | 33.39 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 180 | 33.39 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 200 | 33.45 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 205 | 33.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 216 | 33.50 | humidity | 90 | 14400 | > th | dose dependent | sin | 16 | NA |
| 257 | 33.69 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 22 |
| 264 | 33.71 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 279 | 33.74 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 287 | 33.76 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 296 | 33.78 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 303 | 33.80 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 305 | 33.80 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 3 |
| 307 | 33.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 314 | 33.82 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 11 |
| 315 | 33.82 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 348 | 33.86 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 354 | 33.87 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 387 | 33.92 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 412 | 33.97 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 421 | 33.98 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 430 | 33.98 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 440 | 33.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 453 | 34.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 455 | 34.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 469 | 34.03 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 480 | 34.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 481 | 34.04 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 487 | 34.05 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 553 | 34.12 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 650 | 34.22 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 13 |
| 656 | 34.22 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 659 | 34.23 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 17 |
| 661 | 34.23 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 680 | 34.25 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 15 |
| 691 | 34.26 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 712 | 34.28 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 730 | 34.29 | humidity | 90 | 14400 | < th | dose independent | sin | 16 | NA |
| 764 | 34.32 | humidity | 90 | 14400 | > th | dose independent | sin | 16 | NA |
| 787 | 34.33 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 806 | 34.35 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 835 | 34.37 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 3 |
| 915 | 34.42 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 10 |