BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0386600 Os04g0386600|AK067193
(389 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G43180.1 | chr2:17953719-17955774 REVERSE LENGTH=480 434 e-122
AT1G77060.1 | chr1:28951804-28953449 REVERSE LENGTH=340 187 8e-48
AT1G21440.1 | chr1:7502325-7504103 REVERSE LENGTH=337 180 1e-45
AT3G21720.1 | chr3:7652789-7655873 REVERSE LENGTH=577 55 6e-08
>AT2G43180.1 | chr2:17953719-17955774 REVERSE LENGTH=480
Length = 479
Score = 434 bits (1116), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/430 (52%), Positives = 292/430 (67%), Gaps = 45/430 (10%)
Query: 2 AARSPYFVPESEGIRAGESPAAALRRILASPGAHQAPCCFDALGARLIQRAGFPICFMGG 61
A S ES + SPA LR I+ SPG Q PCCFDAL A+LI+RAGFP C G
Sbjct: 53 AVNSTVVSDESGNAKLPSSPAKKLRNIMQSPGVLQGPCCFDALSAKLIERAGFPYCITSG 112
Query: 62 FCVSAARLGLPDAGLISYGEMVDQGRLITEAVSLPVIGDGDNGYGNAMSIKRTVKGYINA 121
F +SA+RLGLPD GLISYGEMVDQG+ IT++VS+PVIGDG NGYGNAM++KRTVKGYI A
Sbjct: 113 FSISASRLGLPDKGLISYGEMVDQGQQITQSVSIPVIGDGGNGYGNAMNVKRTVKGYIKA 172
Query: 122 GFAGIMLEDQVAPKACGHTEG-RKVISREDAIMHIKAAVDARKESGSDIVIIARSDSRQA 180
GFAGI++ D+V C +T+ R+V+SRE+A+M +KAAVDAR+E SDIVI+A++DSR+A
Sbjct: 173 GFAGIIINDEVC---CENTKSERRVVSREEAVMRVKAAVDARRECDSDIVIVAQTDSREA 229
Query: 181 ISIDEALWRVQAFADAGADVLFIDALASIEEMKAFCAVSPKVPKMANMLEGGGKTPILSP 240
IS++E+L R +AF DAGADVL +D+L S EEMKAFC V P VPK+ANMLE GGK PIL+P
Sbjct: 230 ISLEESLIRARAFTDAGADVLSVDSLVSREEMKAFCNVYPLVPKLANMLESGGKIPILNP 289
Query: 241 AELQEIGFSLVVYPLSLIGVSMLAMEDALIAIKSTGAPRPGSLPSFQEIKDTLGFNRYYK 300
EL+EIG+ LV YP+SLIGVS+ AM+DAL+AIK P PGS+ S +EI + LGF+ Y +
Sbjct: 290 LELEEIGYKLVAYPISLIGVSIQAMQDALLAIKGGRIPPPGSMASLEEIGEILGFDTYEE 349
Query: 301 EEKQYATV----------------------QQAQPLSTNIV------------------- 319
EEK+YAT +Q + L ++
Sbjct: 350 EEKRYATSSSDREVSSSSVYRNQRVAKDDPEQREDLIVEVITPEVYNEPRNPFSRIWSRS 409
Query: 320 LRLKITEKSGTQKINEGIPAGILEKISKAIPGLAGVNLTEILQGADQSQKGKLLLDREDA 379
LR+KI + G +K++ IPAG LE ++ +P L GVNL +++ A GK+LLD +D
Sbjct: 410 LRIKIIGRDGFEKLDVRIPAGFLEGVTNIVPALGGVNLKQLMDDAADEVGGKILLDFKDT 469
Query: 380 TGDRIQVSIE 389
GDRIQV +E
Sbjct: 470 AGDRIQVFLE 479
>AT1G77060.1 | chr1:28951804-28953449 REVERSE LENGTH=340
Length = 339
Score = 187 bits (475), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 171/293 (58%), Gaps = 10/293 (3%)
Query: 25 LRRILASPGAHQAPCCFDALGARLIQRAGFPICFMGGFCVSAARLGLPDAGLISYGEMVD 84
R++ G P C+DAL A ++Q+ GF F+ G+ +SA+ LG PD GL++ EM
Sbjct: 45 FHRLIEEQGIVLMPGCYDALSAAIVQQTGFSAGFISGYALSASLLGKPDFGLLTPPEMAA 104
Query: 85 QGRLIT-EAVSLPVIGDGDNGYGNAMSIKRTVKGYINAGFAGIMLEDQVAPKACGHTEGR 143
R + A ++P+I D D G GNA++I+RTVK I AG AG LEDQ PK CGH G+
Sbjct: 105 TARSVCASAPNIPIIADADTGGGNALNIQRTVKDLIAAGAAGCFLEDQAWPKKCGHMRGK 164
Query: 144 KVISREDAIMHIKAAVDARKESGSDIVIIARSDSRQAIS---IDEALWRVQAFADAGADV 200
+VI E+ I +A DA + SD ++AR+D R + +++A+ RV + +AGAD
Sbjct: 165 QVIPAEEHAAKIASARDAIGD--SDFFLVARTDVRATSAKSGLEDAIARVNLYMEAGADA 222
Query: 201 LFIDALASIEEMKAFCAVSPKVPKMANMLEGGGKTPILSPAELQEIGFSLVVYPLSLIGV 260
F++A +E+K K ++ NM+E GG TP+ +P EL+E+GF L+V+PL+ +
Sbjct: 223 SFVEAPRDDDELKEI-GKRTKGYRVCNMIE-GGVTPLHTPDELKEMGFHLIVHPLTALYA 280
Query: 261 SMLAMEDALIAIKSTGAPRPG--SLPSFQEIKDTLGFNRYYKEEKQYATVQQA 311
S A+ D L +K G+ R + +F+E + + +++ E +Y+ ++ A
Sbjct: 281 STRALVDVLKTLKENGSTRDHLQKMATFEEFNSLVDLDSWFELEARYSNLRNA 333
>AT1G21440.1 | chr1:7502325-7504103 REVERSE LENGTH=337
Length = 336
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 169/294 (57%), Gaps = 12/294 (4%)
Query: 25 LRRILASPGAHQAPCCFDALGARLIQRAGFPICFMGGFCVSAARLGLPDAGLISYGEMVD 84
+ R++ GA P +DAL A ++Q+ GF + G+ +SA LG PD GLI+ EM
Sbjct: 43 VHRLIEEQGAVLIPGVYDALSAAIVQQTGFSAALISGYALSAVTLGKPDFGLITPPEMAA 102
Query: 85 QGRLITEAV-SLPVIGDGDNGYGNAMSIKRTVKGYINAGFAGIMLEDQVAPKACGHTEGR 143
R + A +P+I D D G GNA++++RTVK I AG AG LEDQ PK CGH G+
Sbjct: 103 TARSVCAAAPKIPIIADADTGGGNALNVQRTVKDLIAAGAAGCFLEDQAWPKRCGHMRGK 162
Query: 144 KVISREDAIMHIKAAVDARKESGSDIVIIARSDSRQAIS----IDEALWRVQAFADAGAD 199
+VI E+ I +A DA + +D +IAR+D+R A+S + +A+ R + +AGAD
Sbjct: 163 EVIPAEEHAAKIASARDAIGD--ADFFLIARTDAR-ALSAKTGLSDAIDRANLYMEAGAD 219
Query: 200 VLFIDALASIEEMKAFCAVSPKVPKMANMLEGGGKTPILSPAELQEIGFSLVVYPLSLIG 259
F++A +E+K K ++ NMLE GG+TP+ +P EL+E+GF L+ +PL+ +
Sbjct: 220 ASFVEAPRDDDELKEI-GRRTKGYRLCNMLE-GGRTPLHTPDELKEMGFHLIAHPLTSLY 277
Query: 260 VSMLAMEDALIAIKSTGAPRPG--SLPSFQEIKDTLGFNRYYKEEKQYATVQQA 311
S A+ D L +K G + + +F+E + + +Y+ E +Y+ ++ A
Sbjct: 278 ASTRALVDVLKILKEKGTTKDHLEKMITFEEFNRLVNLDSWYELETKYSNLRNA 331
>AT3G21720.1 | chr3:7652789-7655873 REVERSE LENGTH=577
Length = 576
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 96 PVIGDGDNGYGNAMSIKRTVKGYINAGFAGIMLEDQVA-PKACGHTEGRKVISREDAIMH 154
P+I DGD G+G + + K ++ G AG+ +EDQ + K CGH G+ +++ + I
Sbjct: 171 PIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAVSEHINR 230
Query: 155 IKAAVDARKESGSDIVIIARSDSRQAISI 183
+ AA G++ V++AR+D+ A I
Sbjct: 231 LVAARLQFDVMGTETVLVARTDAVAATLI 259
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,987,696
Number of extensions: 331480
Number of successful extensions: 723
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 713
Number of HSP's successfully gapped: 5
Length of query: 389
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 289
Effective length of database: 8,364,969
Effective search space: 2417476041
Effective search space used: 2417476041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)