BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0503500 Os04g0503500|AK099404
(581 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0503500 Leucine-rich repeat, cysteine-containing subty... 1022 0.0
Os02g0613200 Conserved hypothetical protein 775 0.0
AK105091 393 e-109
>Os04g0503500 Leucine-rich repeat, cysteine-containing subtype containing protein
Length = 581
Score = 1022 bits (2642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/581 (89%), Positives = 521/581 (89%)
Query: 1 MGSACSRKRGQLLVDEEDLYSARFSKSSSFKWLLHTLPRSGSDVHRKVQGPVPVRCPSLM 60
MGSACSRKRGQLLVDEEDLYSARFSKSSSFKWLLHTLPRSGSDVHRKVQGPVPVRCPSLM
Sbjct: 1 MGSACSRKRGQLLVDEEDLYSARFSKSSSFKWLLHTLPRSGSDVHRKVQGPVPVRCPSLM 60
Query: 61 ELCVAKVREDIGKYSDFSLLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYP 120
ELCVAKVREDIGKYSDFSLLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYP
Sbjct: 61 ELCVAKVREDIGKYSDFSLLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYP 120
Query: 121 GVRDAWMEVAASQGQSLLSVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTL 180
GVRDAWMEVAASQGQSLLSVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTL
Sbjct: 121 GVRDAWMEVAASQGQSLLSVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTL 180
Query: 181 SGLSNVTSLSFKKCSAVTAEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNL 240
SGLSNVTSLSFKKCSAVTAEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNL
Sbjct: 181 SGLSNVTSLSFKKCSAVTAEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNL 240
Query: 241 RYCNGITDSDMKHLSDLTNLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLE 300
RYCNGITDSDMKHLSDLTNLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLE
Sbjct: 241 RYCNGITDSDMKHLSDLTNLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLE 300
Query: 301 VISGLASLVLLNLSRCGVYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLN 360
VISGLASLVLLNLSRCGVYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLN
Sbjct: 301 VISGLASLVLLNLSRCGVYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLN 360
Query: 361 LDSCKIGDXXXXXXXXXXXXXXXXXXDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLK 420
LDSCKIGD DTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLK
Sbjct: 361 LDSCKIGDEGLAHLKGLLKLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLK 420
Query: 421 KISGXXXXXXXXXXXXQITDNXXXXXXXXXXXXXXDLFGARITDAGTNCLKYFKNLQSLE 480
KISG QITDN DLFGARITDAGTNCLKYFKNLQSLE
Sbjct: 421 KISGLNSLRSLNLDNRQITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLE 480
Query: 481 VCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTAXXXXXXXXXXXXXXXX 540
VCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTA
Sbjct: 481 VCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTALVSLNVSNSRVSNSGL 540
Query: 541 HHLKPLQNLRSLSLESCKVTAIEIKKLQLAALPNLVSVRPE 581
HHLKPLQNLRSLSLESCKVTAIEIKKLQLAALPNLVSVRPE
Sbjct: 541 HHLKPLQNLRSLSLESCKVTAIEIKKLQLAALPNLVSVRPE 581
>Os02g0613200 Conserved hypothetical protein
Length = 582
Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/583 (69%), Positives = 446/583 (76%), Gaps = 3/583 (0%)
Query: 1 MGSACSRKRGQLLVDEEDLY--SARFSKSSSFKWLLHTLPRSGSDVHRKVQGPVPVRCPS 58
MG+ CSRKR QL V E+D + S+RFSK+SS KWLL TLPRS SDV RK QG P RCPS
Sbjct: 1 MGAVCSRKRSQL-VHEDDSFQTSSRFSKTSSLKWLLLTLPRSNSDVSRKGQGKGPGRCPS 59
Query: 59 LMELCVAKVREDIGKYSDFSLLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLAD 118
LMELCVAK EDI KYS FS+LPRDLSQQ+FNELV N LTE LL FRDCALQDI L +
Sbjct: 60 LMELCVAKACEDINKYSSFSVLPRDLSQQIFNELVASNRLTETLLETFRDCALQDIDLGE 119
Query: 119 YPGVRDAWMEVAASQGQSLLSVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLK 178
YPGV DAWMEV ASQ SLLSVDISCS++TD GL L+DC N+QSL+CNYCD ISEHGL
Sbjct: 120 YPGVNDAWMEVVASQRHSLLSVDISCSEITDSGLYLLRDCPNMQSLACNYCDMISEHGLG 179
Query: 179 TLSGLSNVTSLSFKKCSAVTAEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKL 238
LSGLSN+TSLSFK +TAE +AFAN+VNL +LDLERC KIHGGLVHLKGLR LE L
Sbjct: 180 ILSGLSNLTSLSFKSSDGITAEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESL 239
Query: 239 NLRYCNGITDSDMKHLSDLTNLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAAC 298
N+RYCN I DSD+K+LSDLTNL+ELQL+CC+I+DLGVSYLRGLSKL LNLEGC VTAAC
Sbjct: 240 NMRYCNNIADSDIKYLSDLTNLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAAC 299
Query: 299 LEVISGLASLVLLNLSRCGVYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLEC 358
LE ISGLASLV+LNLSRCG+Y EGCE+ +GL KLKVLNLGFN ITD CL HLKELINLE
Sbjct: 300 LEAISGLASLVVLNLSRCGIYGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLES 359
Query: 359 LNLDSCKIGDXXXXXXXXXXXXXXXXXXDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIG 418
LNLDSCK+GD DTEVGS+GL+HLSGLRNL+SINLSFTLVTD G
Sbjct: 360 LNLDSCKVGDEGLLHLRGLMLLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTG 419
Query: 419 LKKISGXXXXXXXXXXXXQITDNXXXXXXXXXXXXXXDLFGARITDAGTNCLKYFKNLQS 478
+KKIS QITD DLFGARITD GT+C ++FKNL+S
Sbjct: 420 MKKISALNSLKSVNLDNRQITDVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLES 479
Query: 479 LEVCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTAXXXXXXXXXXXXXX 538
LEVCGGLITDAGVKNIKDLKAL LNLSQN NLTDK+LELIS LTA
Sbjct: 480 LEVCGGLITDAGVKNIKDLKALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRVSNA 539
Query: 539 XXHHLKPLQNLRSLSLESCKVTAIEIKKLQLAALPNLVSVRPE 581
HLK LQNLRSLSL+SC+VT E+KKLQ LPNL+SVRPE
Sbjct: 540 GLRHLKDLQNLRSLSLDSCRVTTSEVKKLQATVLPNLISVRPE 582
>AK105091
Length = 364
Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust.
Identities = 211/272 (77%), Positives = 212/272 (77%)
Query: 310 LLNLSRCGVYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDX 369
L+NLSRCGVYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGD
Sbjct: 93 LVNLSRCGVYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDE 152
Query: 370 XXXXXXXXXXXXXXXXXDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGXXXXX 429
DTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISG
Sbjct: 153 GLAHLKGLLKLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLNSLR 212
Query: 430 XXXXXXXQITDNXXXXXXXXXXXXXXDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDA 489
QITDN DLFGARITDAGTNCLKYFKNLQSLEVCGGLITDA
Sbjct: 213 SLNLDNRQITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDA 272
Query: 490 GVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTAXXXXXXXXXXXXXXXXHHLKPLQNL 549
GVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTA HHLKPLQNL
Sbjct: 273 GVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTALVSLNVSNSRVSNSGLHHLKPLQNL 332
Query: 550 RSLSLESCKVTAIEIKKLQLAALPNLVSVRPE 581
RSLSLESCKVTAIEIKKLQLAALPNLVSVRPE
Sbjct: 333 RSLSLESCKVTAIEIKKLQLAALPNLVSVRPE 364
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 136/283 (48%), Gaps = 26/283 (9%)
Query: 214 LDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLTNLRELQLSCCKISDL 273
++L RC G HL+GL KL+ LNL + N ITD+ + HL +L NL L L CKI D
Sbjct: 94 VNLSRCGVYDEGCEHLEGLVKLKVLNLGF-NYITDACLVHLKELINLECLNLDSCKIGDE 152
Query: 274 GVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGVYDEGCEHLEGLVKLK 333
G+++L+GL KL L L V + L +SGL +L +NLS V D G + + GL L+
Sbjct: 153 GLAHLKGLLKLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLNSLR 212
Query: 334 VLNLGFNYITDACLVHLKELINLECLNLDSCKIGDXXXXXXXXXXXXXXXXXXDTEVGSN 393
LNL ITD L L L L L+L +I T+ G+N
Sbjct: 213 SLNLDNRQITDNGLAALTCLTGLTHLDLFGARI---------------------TDAGTN 251
Query: 394 GLRHLSGLRNLQSINLSFTLVTDIGLKKISGXXXXXXXXXXXX-QITDNXXXXXXXXXXX 452
L++ +NLQS+ + L+TD G+K I +TD
Sbjct: 252 CLKY---FKNLQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTAL 308
Query: 453 XXXDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIK 495
++ +R++++G + LK +NL+SL + +T +K ++
Sbjct: 309 VSLNVSNSRVSNSGLHHLKPLQNLRSLSLESCKVTAIEIKKLQ 351
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 140/289 (48%), Gaps = 38/289 (13%)
Query: 140 VDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVTA 199
V++S V D G L+ + L+ L+ + + I++ L L L N+ L+ C +
Sbjct: 94 VNLSRCGVYDEGCEHLEGLVKLKVLNLGF-NYITDACLVHLKELINLECLNLDSCK-IGD 151
Query: 200 EGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLTN 259
EG ++ L SL+L GL HL GLR L+ +NL + +TD +K +S L +
Sbjct: 152 EGLAHLKGLLKLRSLELSDTEVGSNGLRHLSGLRNLQSINLSF-TLVTDIGLKKISGLNS 210
Query: 260 LRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAA---CLEVISGLASLVLLNLSRC 316
LR L L +I+D G++ L L+ L HL+L G +T A CL+ L SL + C
Sbjct: 211 LRSLNLDNRQITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEV-----C 265
Query: 317 G--VYDEGCEHLEGLVKLKVLNLGFN-YITDACLVHLKELINLECLNLDSCKIGDXXXXX 373
G + D G ++++ L L +LNL N +TD L + L L LN+
Sbjct: 266 GGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTALVSLNVS----------- 314
Query: 374 XXXXXXXXXXXXXDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKI 422
++ V ++GL HL L+NL+S++L VT I +KK+
Sbjct: 315 -------------NSRVSNSGLHHLKPLQNLRSLSLESCKVTAIEIKKL 350
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,226,496
Number of extensions: 605914
Number of successful extensions: 3023
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2835
Number of HSP's successfully gapped: 10
Length of query: 581
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 475
Effective length of database: 11,501,117
Effective search space: 5463030575
Effective search space used: 5463030575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)