Os04g0503500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, cysteine-containing subtype containing protein.
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Os04g0503500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, cysteine-containing subtype containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.35 | 0.413 | 12.9 | 0.00165 | 1.28 | 0.808 | 0.0505 | 0.0591 | 0.426 | 0.177 | 21.59 | 1013 | -- | -- |
| 77.36 | 0.41 | 12.9 | -0.014 | 1.28 | 0.805 | 0.0644 | -- | 0.422 | 0.174 | 21.59 | 1016 | -- | -- |
| 77.36 | 0.41 | 12.9 | 0.00574 | 1.28 | 0.809 | -- | 0.0793 | 0.427 | 0.184 | 21.57 | 1005 | -- | -- |
| 77.38 | 0.41 | 12.9 | -0.0161 | 1.28 | 0.804 | -- | -- | 0.422 | 0.176 | 21.59 | 1016 | -- | -- |
| 174.23 | 0.615 | 12.9 | -0.105 | -- | 1.15 | -- | 0.0117 | 0.369 | -- | 21.4 | 894 | -- | -- |
| 99.08 | 0.467 | 12.9 | 0.302 | 1.4 | -- | 0.00454 | -- | 0.657 | 0.113 | -- | -- | -- | -- |
| 99.08 | 0.466 | 12.9 | 0.302 | 1.4 | -- | -- | -- | 0.657 | 0.113 | -- | -- | -- | -- |
| 174.19 | 0.615 | 12.9 | -0.0949 | -- | 1.16 | -- | -- | 0.349 | -- | 21.44 | 894 | -- | -- |
| 77.38 | 0.41 | 12.9 | -- | 1.28 | 0.799 | -- | -- | 0.425 | 0.175 | 21.59 | 1016 | -- | -- |
| 222 | 0.696 | 12.8 | 0.346 | -- | -- | -- | -- | 0.678 | -- | -- | -- | -- | -- |
| 101.48 | 0.471 | 12.9 | -- | 1.4 | -- | -- | -- | 0.624 | 0.125 | -- | -- | -- | -- |
| 174.4 | 0.615 | 12.9 | -- | -- | 1.13 | -- | -- | 0.366 | -- | 21.41 | 894 | -- | -- |
| 225.17 | 0.7 | 12.8 | -- | -- | -- | -- | -- | 0.639 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.70 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 5 | 76.40 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 7 | 76.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 13 | 76.66 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 34 | 77.16 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 96 | 78.09 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 98 | 78.11 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 101 | 78.12 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 102 | 78.13 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 136 | 78.53 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 182 | 79.00 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 233 | 79.37 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 10 |
| 236 | 79.38 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 12 |
| 237 | 79.39 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 265 | 79.54 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 364 | 80.04 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 515 | 80.74 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 517 | 80.74 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 593 | 80.97 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 618 | 81.05 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 646 | 81.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 920 | 81.77 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 942 | 81.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 999 | 81.89 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |