BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0501700 Os04g0501700|AK103837
(711 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0501700 Spc97/Spc98 family protein 1315 0.0
Os09g0446200 Spc97/Spc98 family protein 116 5e-26
>Os04g0501700 Spc97/Spc98 family protein
Length = 711
Score = 1315 bits (3404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/711 (90%), Positives = 646/711 (90%)
Query: 1 MDPAPATPRWNLERPYLTGRFHQEXXXXXXXXXXGSKPYSLDSFSRXXXXXXXAESVIGS 60
MDPAPATPRWNLERPYLTGRFHQE GSKPYSLDSFSR AESVIGS
Sbjct: 1 MDPAPATPRWNLERPYLTGRFHQEAKVAAAAQGAGSKPYSLDSFSRGGGGGGGAESVIGS 60
Query: 61 YAVSVQELLVIDDLLSALVGIEGRYISIKRVRGKEGYVVFQIDSSMDLALQELTRRIFPL 120
YAVSVQELLVIDDLLSALVGIEGRYISIKRVRGKEGYVVFQIDSSMDLALQELTRRIFPL
Sbjct: 61 YAVSVQELLVIDDLLSALVGIEGRYISIKRVRGKEGYVVFQIDSSMDLALQELTRRIFPL 120
Query: 121 CEDFVLVYHFVESRSHFKSGLVNHXXXXXXXXXXXDYQAMVAQLEHQFRLGRLSVQGLWF 180
CEDFVLVYHFVESRSHFKSGLVNH DYQAMVAQLEHQFRLGRLSVQGLWF
Sbjct: 121 CEDFVLVYHFVESRSHFKSGLVNHALAAALRAFLLDYQAMVAQLEHQFRLGRLSVQGLWF 180
Query: 181 FCQRMMSSLNALAVLVEKAISNNTSGSATLNLLQSQAKAMAGDSAVRSLLEKMTECASAA 240
FCQRMMSSLNALAVLVEKAISNNTSGSATLNLLQSQAKAMAGDSAVRSLLEKMTECASAA
Sbjct: 181 FCQRMMSSLNALAVLVEKAISNNTSGSATLNLLQSQAKAMAGDSAVRSLLEKMTECASAA 240
Query: 241 YLRMLERWVYEGVIDDPYGEFFIAENKSLQKESLTQDYDAKYWQQRYSLKDGIPSFLTNV 300
YLRMLERWVYEGVIDDPYGEFFIAENKSLQKESLTQDYDAKYWQQRYSLKDGIPSFLTNV
Sbjct: 241 YLRMLERWVYEGVIDDPYGEFFIAENKSLQKESLTQDYDAKYWQQRYSLKDGIPSFLTNV 300
Query: 301 AATILTTGKYLNVMRECEYTVQVPLSESSKLMGFGSNHQYLECIKSAYDFASGELLTLMK 360
AATILTTGKYLNVMRECEYTVQVPLSESSKLMGFGSNHQYLECIKSAYDFASGELLTLMK
Sbjct: 301 AATILTTGKYLNVMRECEYTVQVPLSESSKLMGFGSNHQYLECIKSAYDFASGELLTLMK 360
Query: 361 DKYDLIGKLRSLKRYLLLDQGDFLVHFMDIAREELTKKPEEISVEKLQSLVDIALRSTAA 420
DKYDLIGKLRSLKRYLLLDQGDFLVHFMDIAREELTKKPEEISVEKLQSLVDIALRSTAA
Sbjct: 361 DKYDLIGKLRSLKRYLLLDQGDFLVHFMDIAREELTKKPEEISVEKLQSLVDIALRSTAA 420
Query: 421 ASDPSHEDLTCCVERXXXXXXXXXXXXXXCAYPSDKLVAADVDHPMPLSVTGLETFCLSY 480
ASDPSHEDLTCCVER CAYPSDKLVAADVDHPMPLSVTGLETFCLSY
Sbjct: 421 ASDPSHEDLTCCVERSSLLKKLSTLKDLDCAYPSDKLVAADVDHPMPLSVTGLETFCLSY 480
Query: 481 KVQWPLSLVISRKSLTKYQLIFRLLFHCKHVSRQLCTAWQIQQGFRSVKILGTPVLRSSI 540
KVQWPLSLVISRKSLTKYQLIFRLLFHCKHVSRQLCTAWQIQQGFRSVKILGTPVLRSSI
Sbjct: 481 KVQWPLSLVISRKSLTKYQLIFRLLFHCKHVSRQLCTAWQIQQGFRSVKILGTPVLRSSI 540
Query: 541 LCRSMLKFVNSLLHYLTFEVLEPNWHLMHDRLQTARSIDEVIQIHDFFXXXXXXXXXXXX 600
LCRSMLKFVNSLLHYLTFEVLEPNWHLMHDRLQTARSIDEVIQIHDFF
Sbjct: 541 LCRSMLKFVNSLLHYLTFEVLEPNWHLMHDRLQTARSIDEVIQIHDFFLQKCLKECLLLL 600
Query: 601 XXXXXXXXXXXALCLQYATSIQLLIPSIDVAKPENTSKSRMPRSKIKETKNRGQQLKLAS 660
ALCLQYATSIQLLIPSIDVAKPENTSKSRMPRSKIKETKNRGQQLKLAS
Sbjct: 601 PELLVKIEKLKALCLQYATSIQLLIPSIDVAKPENTSKSRMPRSKIKETKNRGQQLKLAS 660
Query: 661 ENVVMSESILKFEAEFNSELQSLIPTLSNSSQAEPYLTHLGQCILGVGVDQ 711
ENVVMSESILKFEAEFNSELQSLIPTLSNSSQAEPYLTHLGQCILGVGVDQ
Sbjct: 661 ENVVMSESILKFEAEFNSELQSLIPTLSNSSQAEPYLTHLGQCILGVGVDQ 711
>Os09g0446200 Spc97/Spc98 family protein
Length = 544
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 107/424 (25%), Positives = 182/424 (42%), Gaps = 68/424 (16%)
Query: 189 LNALAVLVEKAISNNTSGSATLNLLQSQAKAMAGDSAVRSLLEKMTECASAAYLRMLERW 248
+ +AVLV+ G A + A+ GD + + ++ + M+ W
Sbjct: 25 MRLMAVLVDGC--RGLRGGAMAGAIHGHAQH--GDPTFQDFMGRLLRRVCSPLFEMVRSW 80
Query: 249 VYEGVIDDPYGEFFIAENKSLQKESLTQDYDAKYWQQRYSLK-DGIPSFLTNV-AATILT 306
V EG ++D + EFFI + ++ ESL WQ+ Y L+ D +P+F++ V A IL
Sbjct: 81 VLEGELEDVFAEFFIV-GQPVKAESL--------WQEGYLLQSDMLPAFISPVLAQRILR 131
Query: 307 TGKYLNVMREC-----------EYTVQVPLSESSKLMGFGSNHQYLECIKSAYDFASGEL 355
TGK +N ++ C E V V + S +G+G + A L
Sbjct: 132 TGKSINFLKVCCDDNGWADAATEAAVCVGTTTSRGGLGYGQIDALEALVVEAAKRIDRHL 191
Query: 356 LTLMKDKYDLIGKLRSLKRYLLLDQGDFLVHFMDIAREELTKKPEEISVEKLQSLVDIAL 415
+ ++ +Y ++KRYLLL QGDF+ + MD+ EL++ IS L L++ A+
Sbjct: 192 MDVIHKRYRFKDHCLAIKRYLLLGQGDFVQYLMDVVGPELSEPANRISSFHLAGLLETAI 251
Query: 416 RSTAAASDPSHEDLTCCVERXXXXXXXXXXXXXXCAYPSDKLVAADVDHPMPLSVTGLET 475
R++ A D D+ D++ +DH G +
Sbjct: 252 RASNAQYDD--RDIL------------------------DRIKVKMMDHGD--GDRGWDV 283
Query: 476 FCLSYKVQWPLSLVISRKSLTKYQLIFRLLFHCKHVSRQLCTAWQI------------QQ 523
F L Y + PL V + + +Y IF L+ K V L W+ ++
Sbjct: 284 FSLEYDARVPLDTVFTASVMKRYLKIFNFLWKLKRVDHSLTGIWKTMKPNCIVSSPFYKE 343
Query: 524 GFRSVKILGTPVLRS-SILCRSMLKFVNSLLHYLTFEVLEPNWHLMHDRLQTARSIDEVI 582
G +++ VLR +L M FV + +Y+ FEVLE +W + + +A+ +D+++
Sbjct: 344 G-TNIRSQFVSVLRKCQVLFNEMNHFVTNFQYYIMFEVLEVSWARFSEEMDSAKDLDDLL 402
Query: 583 QIHD 586
HD
Sbjct: 403 LAHD 406
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,898,069
Number of extensions: 651822
Number of successful extensions: 1485
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1487
Number of HSP's successfully gapped: 2
Length of query: 711
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 603
Effective length of database: 11,396,689
Effective search space: 6872203467
Effective search space used: 6872203467
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 160 (66.2 bits)