Os04g0501700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Spc97/Spc98 family protein.
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Os04g0501700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Spc97/Spc98 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.01 | 0.244 | 8.66 | -0.147 | 0.226 | 0.829 | 0.047 | -0.00775 | 0.126 | 2.13 | 21.4 | 2094 | -- | -- |
| 26.99 | 0.242 | 8.66 | -0.142 | 0.224 | 0.819 | 0.0399 | -- | 0.124 | 2.13 | 21.53 | 2112 | -- | -- |
| 27.02 | 0.242 | 8.66 | -0.147 | 0.226 | 0.829 | -- | -0.00488 | 0.126 | 2.09 | 21.41 | 2094 | -- | -- |
| 27 | 0.242 | 8.66 | -0.143 | 0.224 | 0.819 | -- | -- | 0.124 | 2.1 | 21.53 | 2112 | -- | -- |
| 29.52 | 0.253 | 8.67 | -0.187 | -- | 0.852 | -- | -0.0621 | 0.109 | -- | 21.5 | 2388 | -- | -- |
| 46.53 | 0.32 | 8.61 | 0.238 | 0.262 | -- | -0.0381 | -- | 0.374 | 1.39 | -- | -- | -- | -- |
| 46.54 | 0.319 | 8.61 | 0.239 | 0.262 | -- | -- | -- | 0.374 | 1.41 | -- | -- | -- | -- |
| 29.52 | 0.253 | 8.66 | -0.17 | -- | 0.856 | -- | -- | 0.113 | -- | 21.53 | 2388 | -- | -- |
| 27.45 | 0.244 | 8.66 | -- | 0.224 | 0.768 | -- | -- | 0.153 | 2.04 | 21.59 | 2112 | -- | -- |
| 50.76 | 0.333 | 8.6 | 0.25 | -- | -- | -- | -- | 0.38 | -- | -- | -- | -- | -- |
| 48.05 | 0.324 | 8.61 | -- | 0.266 | -- | -- | -- | 0.348 | 1.44 | -- | -- | -- | -- |
| 30.07 | 0.255 | 8.66 | -- | -- | 0.778 | -- | -- | 0.143 | -- | 21.7 | 2347 | -- | -- |
| 52.4 | 0.338 | 8.61 | -- | -- | -- | -- | -- | 0.352 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 2 | 27.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 11 | 27.36 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 24 | 27.39 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 119 | 27.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 130 | 27.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 215 | 27.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 256 | 27.81 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 273 | 27.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 274 | 27.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 281 | 27.84 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 305 | 27.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 306 | 27.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 6 |
| 358 | 27.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 359 | 27.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 785 | 28.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 830 | 28.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 22 |