BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0501500 Os04g0501500|Os04g0501500
(454 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0501500 BTB domain containing protein 899 0.0
Os02g0612700 BTB domain containing protein 644 0.0
Os06g0159750 Similar to Histone H3 150 1e-36
Os08g0269300 97 2e-20
Os02g0213700 94 2e-19
>Os04g0501500 BTB domain containing protein
Length = 454
Score = 899 bits (2322), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/454 (96%), Positives = 440/454 (96%)
Query: 1 MGGGRVRFNVGGQVFETTTTTLANAGRESMLGALLDSSWNLAPTAXXXXXXXXXXXXXXV 60
MGGGRVRFNVGGQVFETTTTTLANAGRESMLGALLDSSWNLAPTA V
Sbjct: 1 MGGGRVRFNVGGQVFETTTTTLANAGRESMLGALLDSSWNLAPTAGGGGGGGGGGGGGGV 60
Query: 61 AEYFIDRNPACFAVLLDLLRTGSLHVPPQLPEKLLYREALYYGLLDHVRAARWGAFDGDR 120
AEYFIDRNPACFAVLLDLLRTGSLHVPPQLPEKLLYREALYYGLLDHVRAARWGAFDGDR
Sbjct: 61 AEYFIDRNPACFAVLLDLLRTGSLHVPPQLPEKLLYREALYYGLLDHVRAARWGAFDGDR 120
Query: 121 LRLAASVPGRAPGDGTAIRAAPDGGCCVAHGGAVHVYNWMLDERRPVSLDHSQVNDVAYL 180
LRLAASVPGRAPGDGTAIRAAPDGGCCVAHGGAVHVYNWMLDERRPVSLDHSQVNDVAYL
Sbjct: 121 LRLAASVPGRAPGDGTAIRAAPDGGCCVAHGGAVHVYNWMLDERRPVSLDHSQVNDVAYL 180
Query: 181 DEATLLIAARERLGKCDGGMAAFSAVSGDLRHRFRVAHDRQAKSFTAGALAFDQDSSIFA 240
DEATLLIAARERLGKCDGGMAAFSAVSGDLRHRFRVAHDRQAKSFTAGALAFDQDSSIFA
Sbjct: 181 DEATLLIAARERLGKCDGGMAAFSAVSGDLRHRFRVAHDRQAKSFTAGALAFDQDSSIFA 240
Query: 241 SCKGRLNEYGIGVWDRATGEQADFFYEPPGCALGDADKLQWLDATNALMVATLFPKTDNC 300
SCKGRLNEYGIGVWDRATGEQADFFYEPPGCALGDADKLQWLDATNALMVATLFPKTDNC
Sbjct: 241 SCKGRLNEYGIGVWDRATGEQADFFYEPPGCALGDADKLQWLDATNALMVATLFPKTDNC 300
Query: 301 FIGLLDFRDKNVAWSWSDAGMAASLDDKRVLHAIAMEDERSVCVINQYDDLGFLDLRSNA 360
FIGLLDFRDKNVAWSWSDAGMAASLDDKRVLHAIAMEDERSVCVINQYDDLGFLDLRSNA
Sbjct: 301 FIGLLDFRDKNVAWSWSDAGMAASLDDKRVLHAIAMEDERSVCVINQYDDLGFLDLRSNA 360
Query: 361 GGVRWSSRSKFMNRKVPSEESCYPKLATHGGQLFSSMNDSISVFSGPECVLTSTLRRSHG 420
GGVRWSSRSKFMNRKVPSEESCYPKLATHGGQLFSSMNDSISVFSGPECVLTSTLRRSHG
Sbjct: 361 GGVRWSSRSKFMNRKVPSEESCYPKLATHGGQLFSSMNDSISVFSGPECVLTSTLRRSHG 420
Query: 421 GAICDFSIGGDRLFALHNEENVFDVWETPPPPII 454
GAICDFSIGGDRLFALHNEENVFDVWETPPPPII
Sbjct: 421 GAICDFSIGGDRLFALHNEENVFDVWETPPPPII 454
>Os02g0612700 BTB domain containing protein
Length = 458
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/460 (73%), Positives = 374/460 (81%), Gaps = 16/460 (3%)
Query: 4 GRVRFNVGGQVFETTTTTLANAGRESMLGALLDSSWNLAPTAXXXXXXXXXXXXXXVAEY 63
GRVR NVGG+VFET +TLA+AGR++MLGA++D+SWN EY
Sbjct: 6 GRVRLNVGGRVFETMASTLASAGRDTMLGAMIDASWN-------HGGGGDGDGEGGADEY 58
Query: 64 FIDRNPACFAVLLDLLRTGSLHVPPQLPEKLLYREALYYGLLDHVRAARWGAFDGDRLRL 123
FIDR+P CFAVLLDLLRTG LHVPP + + +L REALYYGLLD VRAARWG FDGDRLRL
Sbjct: 59 FIDRDPECFAVLLDLLRTGGLHVPPHVADGVLCREALYYGLLDRVRAARWGPFDGDRLRL 118
Query: 124 AASVPGRAPGDGTAIRAAPDGGCCVAHGGAVHVYNWMLDERRPVSLDHSQVNDVAYLDEA 183
AASV G A GDGTA+RAAPDGGCCVAHGGAV VYNW+++ERR V LDH+ VND AYLDEA
Sbjct: 119 AASVAGSAAGDGTAVRAAPDGGCCVAHGGAVRVYNWVMEERRAVHLDHAPVNDAAYLDEA 178
Query: 184 TLLIAARER--LGKCDGGMAAFSAVSGDLRHRFRVAHDRQAKSFTAGALAFDQDSSIFAS 241
TLL+AARER G+ DGG+AAFSA++GDLRHRFRVAHDR +S+T GALAFD +FAS
Sbjct: 179 TLLVAARERPGTGRRDGGVAAFSALTGDLRHRFRVAHDRHVRSYTPGALAFDSRCKVFAS 238
Query: 242 CKGRLNEYGIGVWDRATGEQADFFYEPPGCALGDADKLQWLDATNALMVATLFPKTDNCF 301
CKGR NEYGIGVWD TGEQADFFYEPPGCALGDADKLQWLD T+ LM AT+FP+TD+ F
Sbjct: 239 CKGRFNEYGIGVWDCTTGEQADFFYEPPGCALGDADKLQWLDGTSTLMAATMFPRTDSSF 298
Query: 302 IGLLDFRD-KNVAWSWSDAGMAASLDDKRVLHAIAMEDERSVCVINQYDDLGFLDLRSN- 359
I LLDFRD KNVAWSWSD G ASL+DK VLHAIAMED RS+CVINQYDDLGFLD+RS+
Sbjct: 299 ISLLDFRDKKNVAWSWSDVGTPASLEDKHVLHAIAMEDGRSLCVINQYDDLGFLDVRSSG 358
Query: 360 -AGGVRWSSRSKFMNRKVP----SEESCYPKLATHGGQLFSSMNDSISVFSGPECVLTST 414
AGGVRW SRSK RK EE+CYPKLA HGGQLF+S ND+ISVFSGP+ VLTST
Sbjct: 359 GAGGVRWRSRSKLAARKKKAAPRGEETCYPKLAAHGGQLFASTNDTISVFSGPDHVLTST 418
Query: 415 LRRSHGGAICDFSIGGDRLFALHNEENVFDVWETPPPPII 454
LR S GAICDFSIGGDRLFALHNEENV DVWET PPPII
Sbjct: 419 LRGSDAGAICDFSIGGDRLFALHNEENVVDVWETSPPPII 458
>Os06g0159750 Similar to Histone H3
Length = 250
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/96 (76%), Positives = 78/96 (81%), Gaps = 1/96 (1%)
Query: 250 GIGVWDRATGEQADFFYEPPGCALGDADKLQWLDATNALMVATLFPKTDNCFIGLLDFRD 309
GIGVWD TGEQADFFYEPPGCALGDADKLQWLD T+ LM AT+F +TD FI LLDFRD
Sbjct: 11 GIGVWDCTTGEQADFFYEPPGCALGDADKLQWLDGTSTLMAATMFLRTDTSFIILLDFRD 70
Query: 310 -KNVAWSWSDAGMAASLDDKRVLHAIAMEDERSVCV 344
KNVAW WSD G ASL+DK VLHAIAMED RS +
Sbjct: 71 KKNVAWLWSDVGTPASLEDKNVLHAIAMEDGRSRSI 106
>Os08g0269300
Length = 77
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 52/69 (75%)
Query: 90 LPEKLLYREALYYGLLDHVRAARWGAFDGDRLRLAASVPGRAPGDGTAIRAAPDGGCCVA 149
LP +LYYGLLD R ARWG FDGD+L+LAAS+ G A GDGTA+RAAPDGGCCVA
Sbjct: 9 LPGGARRSTSLYYGLLDRFREARWGPFDGDQLQLAASMAGNAAGDGTAVRAAPDGGCCVA 68
Query: 150 HGGAVHVYN 158
HG AV VY
Sbjct: 69 HGSAVRVYK 77
>Os02g0213700
Length = 80
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 51/69 (73%)
Query: 90 LPEKLLYREALYYGLLDHVRAARWGAFDGDRLRLAASVPGRAPGDGTAIRAAPDGGCCVA 149
LP +LYYGLLD R ARWG FDGD+L LAAS+ G A GDGTA+RAAPDGGCCVA
Sbjct: 12 LPGGARRSTSLYYGLLDLFREARWGPFDGDQLHLAASMAGNAAGDGTAVRAAPDGGCCVA 71
Query: 150 HGGAVHVYN 158
HG AV VY
Sbjct: 72 HGSAVRVYK 80
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,158,467
Number of extensions: 825803
Number of successful extensions: 1714
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1708
Number of HSP's successfully gapped: 5
Length of query: 454
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 350
Effective length of database: 11,605,545
Effective search space: 4061940750
Effective search space used: 4061940750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)