BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0498900 Os04g0498900|J065071K10
         (190 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0498900  Conserved hypothetical protein                      366   e-102
Os05g0376300  Conserved hypothetical protein                      360   e-100

>Os04g0498900 Conserved hypothetical protein
          Length = 190

 Score =  366 bits (940), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/190 (93%), Positives = 178/190 (93%)

Query: 1   IFXXXXXXXXXXXXLGFGEGQLLHKLCKVYLFISSQRIVGCLVAEPIKTAHKVIPGSTEE 60
           IF            LGFGEGQLLHKLCKVYLFISSQRIVGCLVAEPIKTAHKVIPGSTEE
Sbjct: 1   IFQVQEVIKVVQKELGFGEGQLLHKLCKVYLFISSQRIVGCLVAEPIKTAHKVIPGSTEE 60

Query: 61  NGTDLPVDKIEPVKTNHTLEFGKISFKREVLKRHDHSDKNKEEYRDPGAIICEKEDVPAH 120
           NGTDLPVDKIEPVKTNHTLEFGKISFKREVLKRHDHSDKNKEEYRDPGAIICEKEDVPAH
Sbjct: 61  NGTDLPVDKIEPVKTNHTLEFGKISFKREVLKRHDHSDKNKEEYRDPGAIICEKEDVPAH 120

Query: 121 CGFRAIWVVPSRRRKRIGSQLMDAARKSFLEGETLCISQCAFSPPTSSGKALARSYCKTS 180
           CGFRAIWVVPSRRRKRIGSQLMDAARKSFLEGETLCISQCAFSPPTSSGKALARSYCKTS
Sbjct: 121 CGFRAIWVVPSRRRKRIGSQLMDAARKSFLEGETLCISQCAFSPPTSSGKALARSYCKTS 180

Query: 181 AFLVYKEQDA 190
           AFLVYKEQDA
Sbjct: 181 AFLVYKEQDA 190



>Os05g0376300 Conserved hypothetical protein
          Length = 326

 Score =  360 bits (924), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/176 (98%), Positives = 174/176 (98%)

Query: 15  LGFGEGQLLHKLCKVYLFISSQRIVGCLVAEPIKTAHKVIPGSTEENGTDLPVDKIEPVK 74
           LGFGEGQLLHKLCKVYLFISSQRIVGCLV EPIKTAHKVIPGSTEENG+DLPVDKIEPVK
Sbjct: 151 LGFGEGQLLHKLCKVYLFISSQRIVGCLVVEPIKTAHKVIPGSTEENGSDLPVDKIEPVK 210

Query: 75  TNHTLEFGKISFKREVLKRHDHSDKNKEEYRDPGAIICEKEDVPAHCGFRAIWVVPSRRR 134
           TNHTL FGKISFKREVLKRHDHSDKNKEEYRDPGAIICEKEDVPAHCGFRAIWVVPSRRR
Sbjct: 211 TNHTLAFGKISFKREVLKRHDHSDKNKEEYRDPGAIICEKEDVPAHCGFRAIWVVPSRRR 270

Query: 135 KRIGSQLMDAARKSFLEGETLCISQCAFSPPTSSGKALARSYCKTSAFLVYKEQDA 190
           KRIGSQLMDAARKSFLEGETLCISQCAFSPPTSSGKALARSYCKTSAFLVYKEQDA
Sbjct: 271 KRIGSQLMDAARKSFLEGETLCISQCAFSPPTSSGKALARSYCKTSAFLVYKEQDA 326



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,585,743
Number of extensions: 277086
Number of successful extensions: 484
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 95
Effective length of database: 12,075,471
Effective search space: 1147169745
Effective search space used: 1147169745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)