BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0490800 Os04g0490800|AK066522
(365 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0490800 2-phosphoglycolate phosphatase, eukaryotic fam... 648 0.0
AK105071 648 0.0
Os09g0261300 Similar to 4-nitrophenylphosphatase-like protein 403 e-113
Os12g0420000 Conserved hypothetical protein 218 4e-57
>Os04g0490800 2-phosphoglycolate phosphatase, eukaryotic family protein
Length = 365
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/365 (88%), Positives = 322/365 (88%)
Query: 1 MLLTRXXXXXXXXXXXXXXXXXXXXXXXXXGRSQYRRGGGLVSVSSPVAGQRCAARRRSV 60
MLLTR GRSQYRRGGGLVSVSSPVAGQRCAARRRSV
Sbjct: 1 MLLTRASPTFLPSTSAASPSPQQAPSSPTFGRSQYRRGGGLVSVSSPVAGQRCAARRRSV 60
Query: 61 MXXXXXXXXXKLENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFV 120
M KLENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFV
Sbjct: 61 MAAAGAVPAAKLENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFV 120
Query: 121 TNNSTKSRKQYGKKFETLGLNVNEEEIXXXXXXXXXYLQSIDFPKDKKVYVIGEDGILKE 180
TNNSTKSRKQYGKKFETLGLNVNEEEI YLQSIDFPKDKKVYVIGEDGILKE
Sbjct: 121 TNNSTKSRKQYGKKFETLGLNVNEEEIFASSFAAAAYLQSIDFPKDKKVYVIGEDGILKE 180
Query: 181 LELAGFQYLGGPSDGDKKIELKPGFYMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENP 240
LELAGFQYLGGPSDGDKKIELKPGFYMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENP
Sbjct: 181 LELAGFQYLGGPSDGDKKIELKPGFYMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENP 240
Query: 241 GCLFIATNRDAVTHLTDAQEWAGGGSMVGAILGSTKQEPLVVGKPSTFMMDYLAKKFGIT 300
GCLFIATNRDAVTHLTDAQEWAGGGSMVGAILGSTKQEPLVVGKPSTFMMDYLAKKFGIT
Sbjct: 241 GCLFIATNRDAVTHLTDAQEWAGGGSMVGAILGSTKQEPLVVGKPSTFMMDYLAKKFGIT 300
Query: 301 TSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSVQMLQSPDNSIQPDFYTNQISDFLTL 360
TSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSVQMLQSPDNSIQPDFYTNQISDFLTL
Sbjct: 301 TSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSVQMLQSPDNSIQPDFYTNQISDFLTL 360
Query: 361 KAATV 365
KAATV
Sbjct: 361 KAATV 365
>AK105071
Length = 365
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/365 (88%), Positives = 322/365 (88%)
Query: 1 MLLTRXXXXXXXXXXXXXXXXXXXXXXXXXGRSQYRRGGGLVSVSSPVAGQRCAARRRSV 60
MLLTR GRSQYRRGGGLVSVSSPVAGQRCAARRRSV
Sbjct: 1 MLLTRASPTFLPSTSAASPSPQQAPSSPTFGRSQYRRGGGLVSVSSPVAGQRCAARRRSV 60
Query: 61 MXXXXXXXXXKLENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFV 120
M KLENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFV
Sbjct: 61 MAAAGAVPAAKLENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFV 120
Query: 121 TNNSTKSRKQYGKKFETLGLNVNEEEIXXXXXXXXXYLQSIDFPKDKKVYVIGEDGILKE 180
TNNSTKSRKQYGKKFETLGLNVNEEEI YLQSIDFPKDKKVYVIGEDGILKE
Sbjct: 121 TNNSTKSRKQYGKKFETLGLNVNEEEIFASSFAAAAYLQSIDFPKDKKVYVIGEDGILKE 180
Query: 181 LELAGFQYLGGPSDGDKKIELKPGFYMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENP 240
LELAGFQYLGGPSDGDKKIELKPGFYMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENP
Sbjct: 181 LELAGFQYLGGPSDGDKKIELKPGFYMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENP 240
Query: 241 GCLFIATNRDAVTHLTDAQEWAGGGSMVGAILGSTKQEPLVVGKPSTFMMDYLAKKFGIT 300
GCLFIATNRDAVTHLTDAQEWAGGGSMVGAILGSTKQEPLVVGKPSTFMMDYLAKKFGIT
Sbjct: 241 GCLFIATNRDAVTHLTDAQEWAGGGSMVGAILGSTKQEPLVVGKPSTFMMDYLAKKFGIT 300
Query: 301 TSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSVQMLQSPDNSIQPDFYTNQISDFLTL 360
TSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSVQMLQSPDNSIQPDFYTNQISDFLTL
Sbjct: 301 TSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSVQMLQSPDNSIQPDFYTNQISDFLTL 360
Query: 361 KAATV 365
KAATV
Sbjct: 361 KAATV 365
>Os09g0261300 Similar to 4-nitrophenylphosphatase-like protein
Length = 303
Score = 403 bits (1036), Expect = e-113, Method: Compositional matrix adjust.
Identities = 186/286 (65%), Positives = 224/286 (78%)
Query: 75 ADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKK 134
A +L+DSV+ F+FDCDGVIWKGD+LI+GVPETLD+LR GK+LVFVTNNS KSR+QY KK
Sbjct: 15 ARSLVDSVDAFLFDCDGVIWKGDQLIEGVPETLDLLRKMGKKLVFVTNNSRKSRRQYAKK 74
Query: 135 FETLGLNVNEEEIXXXXXXXXXYLQSIDFPKDKKVYVIGEDGILKELELAGFQYLGGPSD 194
F LGL V EEEI +L+ +F +KKVYV+GEDGIL+EL LAGF+ LGGP D
Sbjct: 75 FRALGLEVTEEEIFTSSFAAAMFLKLNNFSPEKKVYVVGEDGILEELRLAGFECLGGPED 134
Query: 195 GDKKIELKPGFYMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTH 254
G K I L+ FY EHDK VGAV+VG D+YFNYYK+QY +LCIRENPGCLFIATNRD H
Sbjct: 135 GKKNILLEANFYFEHDKSVGAVIVGLDQYFNYYKMQYASLCIRENPGCLFIATNRDPTGH 194
Query: 255 LTDAQEWAGGGSMVGAILGSTKQEPLVVGKPSTFMMDYLAKKFGITTSQICMVGDRLDTD 314
+T QEW G G+MV A+ S ++EP+VVGKPS+F+MD+L K F + TS++CMVGDRLDTD
Sbjct: 195 MTSVQEWPGAGTMVAAVSCSVQKEPIVVGKPSSFLMDFLLKSFNLETSRMCMVGDRLDTD 254
Query: 315 ILFGQNGGCKTLLVLSGVTSVQMLQSPDNSIQPDFYTNQISDFLTL 360
ILFGQN GCKTLLVLSGVT++ LQ N+I PD YTN + D + L
Sbjct: 255 ILFGQNTGCKTLLVLSGVTTLPELQDASNTIHPDLYTNSVYDLVGL 300
>Os12g0420000 Conserved hypothetical protein
Length = 210
Score = 218 bits (556), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 112/144 (77%), Positives = 114/144 (79%), Gaps = 5/144 (3%)
Query: 71 KLENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQ 130
KLE+A LIDSVETFIFDCDG D RSKGKRLVFVTNNSTKSRKQ
Sbjct: 38 KLEDAATLIDSVETFIFDCDGREADRRSARDAR-----HARSKGKRLVFVTNNSTKSRKQ 92
Query: 131 YGKKFETLGLNVNEEEIXXXXXXXXXYLQSIDFPKDKKVYVIGEDGILKELELAGFQYLG 190
YGKKFETLGLNVNEEEI YLQSIDFPKDKKVYVIGEDGILKELELAGFQYLG
Sbjct: 93 YGKKFETLGLNVNEEEIFASSFAYVAYLQSIDFPKDKKVYVIGEDGILKELELAGFQYLG 152
Query: 191 GPSDGDKKIELKPGFYMEHDKDVG 214
GPSDGDKKIELKPGFYMEHDKD+
Sbjct: 153 GPSDGDKKIELKPGFYMEHDKDIN 176
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,163,617
Number of extensions: 450134
Number of successful extensions: 833
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 832
Number of HSP's successfully gapped: 4
Length of query: 365
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 263
Effective length of database: 11,709,973
Effective search space: 3079722899
Effective search space used: 3079722899
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)