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Os04g0490800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 2-phosphoglycolate phosphatase, eukaryotic family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.4 (0.0267) R2 : 0.635
β1 : -1.69 (0.0977) R2dD : 0.249 R2D : 0.158
β2 : 1.44 (0.0693) R2dC : 0.349 R2C : 0.298
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.68 (0.057) R2dN8 : 0.153 R2N8 : 0.0426
σ : 0.502
deviance : 114.83
__
_____
C
peak time of C : 6.88
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.75 0.435 13.5 -1.49 1.45 -0.404 2.32 -2.36 -0.726 6.87 0.3054 2392 -- --
90.45 0.443 13.4 -1.48 1.45 -0.786 2.18 -- -0.713 6.93 0.5162 3002 -- --
99.17 0.464 13.5 -1.45 1.45 -0.591 -- -1.61 -0.735 6.83 0.5 2250 -- --
99.45 0.464 13.4 -1.41 1.44 -0.963 -- -- -0.718 6.95 2.729e-05 2126 -- --
204.14 0.665 13.5 -1.39 -- -0.887 -- -1.55 -0.709 -- 0.3655 1733 -- --
102.26 0.474 13.4 -1.73 1.43 -- 2.21 -- -0.674 6.97 -- -- -- --
114.83 0.502 13.4 -1.69 1.44 -- -- -- -0.68 6.88 -- -- -- --
204.59 0.666 13.5 -1.38 -- -1.23 -- -- -0.709 -- 4.278e-06 1755 -- --
142.89 0.557 13.4 -- 1.45 -1.43 -- -- -0.583 6.76 0.5 2212 -- --
223.95 0.699 13.5 -1.66 -- -- -- -- -0.652 -- -- -- -- --
190.32 0.645 13.4 -- 1.42 -- -- -- -0.491 6.95 -- -- -- --
244.47 0.728 13.5 -- -- -1.89 -- -- -0.636 -- 0.02197 1975 -- --
296.78 0.804 13.4 -- -- -- -- -- -0.468 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.74 precipitation 0.1 4320 > th dose dependent rect. 19 22
2 84.98 precipitation 0.1 4320 > th dose dependent rect. 19 19
3 84.99 precipitation 0.1 4320 > th dose dependent rect. 19 10
24 85.53 precipitation 0.1 4320 > th dose dependent rect. 21 20
25 85.57 precipitation 0.1 14400 > th dose dependent rect. 13 1
34 85.96 precipitation 0.1 4320 < th dose independent rect. 18 23
35 85.96 precipitation 0.1 4320 < th dose dependent rect. 18 23
37 85.98 precipitation 0.1 4320 > th dose independent rect. 18 23
39 86.00 precipitation 0.1 4320 > th dose dependent rect. 19 2
44 86.36 precipitation 0.1 1440 > th dose independent sin 9 NA
45 86.36 precipitation 0.1 1440 < th dose independent sin 9 NA
46 86.36 precipitation 0.1 1440 < th dose dependent sin 9 NA
47 86.37 precipitation 0.1 4320 > th dose dependent rect. 3 14
57 86.46 precipitation 0.1 4320 > th dose dependent rect. 13 4
58 86.48 precipitation 0.1 1440 < th dose independent rect. 22 8
59 86.48 precipitation 0.1 1440 < th dose dependent rect. 22 8
60 86.54 precipitation 0.1 4320 > th dose dependent rect. 3 1
61 86.54 precipitation 0.1 4320 > th dose dependent rect. 3 11
62 86.57 precipitation 0.1 1440 < th dose independent rect. 22 15
63 86.57 precipitation 0.1 1440 < th dose dependent rect. 22 15
65 86.61 precipitation 0.1 1440 < th dose independent rect. 19 18
66 86.61 wind 3.0 43200 < th dose dependent rect. 23 7
67 86.61 precipitation 0.1 1440 < th dose dependent rect. 19 18
68 86.62 precipitation 0.1 4320 < th dose independent rect. 18 12
69 86.62 precipitation 0.1 4320 < th dose independent rect. 18 20
71 86.62 precipitation 0.1 4320 < th dose dependent rect. 18 12
72 86.62 precipitation 0.1 4320 < th dose dependent rect. 18 20
73 86.63 precipitation 0.1 14400 > th dose independent rect. 19 1
74 86.63 precipitation 0.1 1440 > th dose independent rect. 22 8
76 86.65 precipitation 0.1 4320 > th dose independent rect. 18 12
77 86.68 precipitation 0.1 1440 < th dose independent rect. 22 6
79 86.68 precipitation 0.1 1440 < th dose dependent rect. 22 6
80 86.69 precipitation 0.1 14400 < th dose independent rect. 19 1
81 86.69 precipitation 0.1 14400 < th dose dependent rect. 19 1
83 86.70 precipitation 0.1 4320 > th dose independent rect. 18 20
85 86.71 precipitation 0.1 4320 > th dose independent rect. 18 14
92 86.72 precipitation 0.1 4320 < th dose independent rect. 18 14
94 86.72 precipitation 0.1 4320 < th dose dependent rect. 18 14
99 86.76 precipitation 0.1 4320 > th dose independent rect. 13 1
118 86.81 precipitation 0.1 1440 > th dose independent rect. 22 15
124 86.82 precipitation 0.1 1440 > th dose independent rect. 19 18
147 86.88 precipitation 0.1 4320 < th dose independent rect. 13 1
148 86.88 precipitation 0.1 1440 < th dose independent rect. 19 9
149 86.88 precipitation 0.1 4320 < th dose dependent rect. 13 1
152 86.88 precipitation 0.1 1440 < th dose dependent rect. 19 9
156 86.90 precipitation 0.1 1440 < th dose independent rect. 22 12
157 86.90 precipitation 0.1 1440 < th dose dependent rect. 22 12
158 86.90 precipitation 0.1 4320 > th dose dependent rect. 22 16
171 86.97 humidity 80.0 14400 > th dose independent rect. 15 1
201 87.05 precipitation 0.1 1440 > th dose independent rect. 22 6
208 87.07 precipitation 0.1 4320 > th dose dependent rect. 3 3
221 87.14 precipitation 0.1 1440 > th dose independent rect. 22 18
224 87.15 precipitation 0.1 4320 > th dose dependent sin 9 NA
259 87.25 precipitation 0.1 4320 > th dose independent rect. 21 20
266 87.27 precipitation 0.1 1440 > th dose dependent rect. 21 12
267 87.27 precipitation 0.1 1440 > th dose dependent rect. 21 14
298 87.35 precipitation 0.1 1440 > th dose dependent rect. 21 9
349 87.50 precipitation 0.1 4320 < th dose independent rect. 3 1
351 87.50 precipitation 0.1 4320 < th dose dependent rect. 3 1
371 87.62 precipitation 0.1 4320 < th dose independent rect. 12 18
372 87.62 precipitation 0.1 4320 < th dose dependent rect. 12 18
374 87.63 precipitation 0.1 4320 > th dose independent rect. 13 17
389 87.69 precipitation 0.1 14400 > th dose independent rect. 13 4
390 87.69 precipitation 0.1 4320 < th dose independent rect. 12 20
391 87.69 precipitation 0.1 4320 < th dose dependent rect. 12 20
401 87.73 wind 1.0 4320 > th dose independent rect. 17 2
409 87.75 wind 1.0 1440 > th dose independent rect. 9 10
411 87.75 humidity 80.0 14400 > th dose dependent rect. 13 1
415 87.76 wind 1.0 14400 > th dose dependent rect. 24 1
433 87.79 precipitation 0.1 4320 > th dose independent rect. 3 1
435 87.80 precipitation 0.1 14400 < th dose independent rect. 13 4
436 87.80 precipitation 0.1 4320 > th dose independent rect. 3 14
441 87.80 precipitation 0.1 14400 < th dose dependent rect. 13 4
446 87.81 precipitation 0.1 4320 < th dose independent rect. 3 3
447 87.81 precipitation 0.1 4320 < th dose dependent rect. 3 3
448 87.82 precipitation 0.1 4320 < th dose independent rect. 3 14
453 87.82 precipitation 0.1 4320 < th dose dependent rect. 3 14
497 87.90 precipitation 0.1 4320 > th dose independent rect. 3 3
509 87.93 precipitation 0.1 4320 < th dose independent rect. 16 22
511 87.93 precipitation 0.1 4320 < th dose dependent rect. 16 22
512 87.94 precipitation 0.1 4320 > th dose independent rect. 16 22
523 87.97 precipitation 0.1 4320 > th dose independent rect. 21 23
534 87.99 precipitation 0.1 4320 < th dose independent rect. 21 23
536 87.99 wind 3.0 43200 < th dose dependent rect. 1 2
540 87.99 precipitation 0.1 4320 < th dose dependent rect. 21 23
546 88.00 wind 9.0 14400 > th dose dependent rect. 10 1
560 88.02 precipitation 0.1 4320 < th dose independent rect. 7 23
562 88.02 precipitation 0.1 4320 < th dose dependent rect. 7 23
573 88.05 precipitation 0.1 4320 > th dose independent rect. 7 23
598 88.08 precipitation 0.1 4320 > th dose independent rect. 16 14
630 88.12 precipitation 0.1 4320 > th dose independent no NA NA
631 88.12 precipitation 0.1 4320 < th dose independent no NA NA
633 88.12 precipitation 0.1 4320 < th dose independent rect. 16 14
636 88.12 precipitation 0.1 4320 < th dose dependent no NA NA
637 88.12 precipitation 0.1 4320 < th dose dependent rect. 16 14
640 88.13 precipitation 0.1 4320 > th dose independent rect. 16 16
643 88.14 precipitation 0.1 4320 < th dose independent rect. 24 23
644 88.14 precipitation 0.1 4320 < th dose dependent rect. 24 23
651 88.15 precipitation 0.1 4320 > th dose independent rect. 24 23
665 88.17 wind 1.0 4320 < th dose independent rect. 18 1
681 88.19 precipitation 0.1 4320 < th dose independent rect. 3 11
688 88.19 precipitation 0.1 4320 < th dose dependent rect. 3 11
695 88.20 precipitation 0.1 4320 < th dose independent rect. 16 16
696 88.20 precipitation 0.1 4320 < th dose dependent rect. 16 16
723 88.26 wind 1.0 1440 > th dose independent rect. 13 6
735 88.28 humidity 80.0 14400 < th dose independent rect. 14 1
736 88.28 precipitation 0.1 4320 > th dose independent rect. 3 11
750 88.30 wind 1.0 1440 < th dose independent rect. 9 10
766 88.33 precipitation 0.1 4320 > th dose dependent rect. 7 7
772 88.34 precipitation 0.1 14400 < th dose independent rect. 17 1
777 88.34 precipitation 0.1 14400 < th dose dependent rect. 17 1
799 88.38 wind 3.0 14400 < th dose independent rect. 24 1
867 88.48 precipitation 0.1 14400 > th dose independent rect. 16 1
988 88.73 wind 3.0 43200 < th dose dependent sin 9 NA
991 88.74 precipitation 0.1 14400 > th dose independent rect. 13 7