BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0490800 Os04g0490800|AK066522
(365 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G36700.1 | chr5:14421929-14424430 REVERSE LENGTH=363 539 e-154
AT5G36790.1 | chr5:14481229-14483730 REVERSE LENGTH=363 539 e-154
AT5G47760.1 | chr5:19343121-19344979 REVERSE LENGTH=302 394 e-110
>AT5G36700.1 | chr5:14421929-14424430 REVERSE LENGTH=363
Length = 362
Score = 539 bits (1389), Expect = e-154, Method: Compositional matrix adjust.
Identities = 257/295 (87%), Positives = 275/295 (93%)
Query: 71 KLENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQ 130
+LENAD LIDSVETFIFDCDGVIWKGDKLI+GVPETLDMLR+KGKRLVFVTNNSTKSRKQ
Sbjct: 68 QLENADQLIDSVETFIFDCDGVIWKGDKLIEGVPETLDMLRAKGKRLVFVTNNSTKSRKQ 127
Query: 131 YGKKFETLGLNVNEEEIXXXXXXXXXYLQSIDFPKDKKVYVIGEDGILKELELAGFQYLG 190
YGKKFETLGLNVNEEEI YLQSI+FPKDKKVYVIGE+GILKELELAGFQYLG
Sbjct: 128 YGKKFETLGLNVNEEEIFASSFAAAAYLQSINFPKDKKVYVIGEEGILKELELAGFQYLG 187
Query: 191 GPSDGDKKIELKPGFYMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRD 250
GP DG ++IELKPGF MEHD DVGAVVVGFDRYFNYYK+QYGTLCIRENPGCLFIATNRD
Sbjct: 188 GPDDGKRQIELKPGFLMEHDHDVGAVVVGFDRYFNYYKIQYGTLCIRENPGCLFIATNRD 247
Query: 251 AVTHLTDAQEWAGGGSMVGAILGSTKQEPLVVGKPSTFMMDYLAKKFGITTSQICMVGDR 310
AVTHLTDAQEWAGGGSMVGA++GST++EPLVVGKPSTFMMDYLA KFGI SQICMVGDR
Sbjct: 248 AVTHLTDAQEWAGGGSMVGALVGSTQREPLVVGKPSTFMMDYLADKFGIQKSQICMVGDR 307
Query: 311 LDTDILFGQNGGCKTLLVLSGVTSVQMLQSPDNSIQPDFYTNQISDFLTLKAATV 365
LDTDILFGQNGGCKTLLVLSGVTS+ ML+SP+N IQPDFYT++ISDFL+ KAATV
Sbjct: 308 LDTDILFGQNGGCKTLLVLSGVTSISMLESPENKIQPDFYTSKISDFLSPKAATV 362
>AT5G36790.1 | chr5:14481229-14483730 REVERSE LENGTH=363
Length = 362
Score = 539 bits (1389), Expect = e-154, Method: Compositional matrix adjust.
Identities = 257/295 (87%), Positives = 275/295 (93%)
Query: 71 KLENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQ 130
+LENAD LIDSVETFIFDCDGVIWKGDKLI+GVPETLDMLR+KGKRLVFVTNNSTKSRKQ
Sbjct: 68 QLENADQLIDSVETFIFDCDGVIWKGDKLIEGVPETLDMLRAKGKRLVFVTNNSTKSRKQ 127
Query: 131 YGKKFETLGLNVNEEEIXXXXXXXXXYLQSIDFPKDKKVYVIGEDGILKELELAGFQYLG 190
YGKKFETLGLNVNEEEI YLQSI+FPKDKKVYVIGE+GILKELELAGFQYLG
Sbjct: 128 YGKKFETLGLNVNEEEIFASSFAAAAYLQSINFPKDKKVYVIGEEGILKELELAGFQYLG 187
Query: 191 GPSDGDKKIELKPGFYMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRD 250
GP DG ++IELKPGF MEHD DVGAVVVGFDRYFNYYK+QYGTLCIRENPGCLFIATNRD
Sbjct: 188 GPDDGKRQIELKPGFLMEHDHDVGAVVVGFDRYFNYYKIQYGTLCIRENPGCLFIATNRD 247
Query: 251 AVTHLTDAQEWAGGGSMVGAILGSTKQEPLVVGKPSTFMMDYLAKKFGITTSQICMVGDR 310
AVTHLTDAQEWAGGGSMVGA++GST++EPLVVGKPSTFMMDYLA KFGI SQICMVGDR
Sbjct: 248 AVTHLTDAQEWAGGGSMVGALVGSTQREPLVVGKPSTFMMDYLADKFGIQKSQICMVGDR 307
Query: 311 LDTDILFGQNGGCKTLLVLSGVTSVQMLQSPDNSIQPDFYTNQISDFLTLKAATV 365
LDTDILFGQNGGCKTLLVLSGVTS+ ML+SP+N IQPDFYT++ISDFL+ KAATV
Sbjct: 308 LDTDILFGQNGGCKTLLVLSGVTSISMLESPENKIQPDFYTSKISDFLSPKAATV 362
>AT5G47760.1 | chr5:19343121-19344979 REVERSE LENGTH=302
Length = 301
Score = 394 bits (1011), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/288 (64%), Positives = 228/288 (79%), Gaps = 1/288 (0%)
Query: 74 NADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGK 133
N +L DSV+TF+FDCDGVIWKG+ LIDGV +TLD++RSKGK +VFVTNNS KSR+QY +
Sbjct: 10 NFKSLFDSVDTFLFDCDGVIWKGETLIDGVSQTLDLIRSKGKNVVFVTNNSVKSRRQYAE 69
Query: 134 KFETLGL-NVNEEEIXXXXXXXXXYLQSIDFPKDKKVYVIGEDGILKELELAGFQYLGGP 192
KF +LG+ ++ ++EI YL+ +FPKDKKVYVIG +G+L+EL++AGF LGGP
Sbjct: 70 KFRSLGVTSITQDEIFSSSFAAAMYLKVNNFPKDKKVYVIGGEGVLEELQIAGFTGLGGP 129
Query: 193 SDGDKKIELKPGFYMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAV 252
DG+KK + K EHDK VGAVVVG D NYYK+QYGTLC+RENPGCLFIATNRDAV
Sbjct: 130 EDGEKKAQWKSNSLFEHDKSVGAVVVGLDPNINYYKLQYGTLCVRENPGCLFIATNRDAV 189
Query: 253 THLTDAQEWAGGGSMVGAILGSTKQEPLVVGKPSTFMMDYLAKKFGITTSQICMVGDRLD 312
H+TD QEW G G MV A+ GST++EP+VVGKPSTFMMD+L +KFG TS++CMVGDRLD
Sbjct: 190 GHMTDLQEWPGAGCMVAAMCGSTEREPIVVGKPSTFMMDFLLQKFGTETSRMCMVGDRLD 249
Query: 313 TDILFGQNGGCKTLLVLSGVTSVQMLQSPDNSIQPDFYTNQISDFLTL 360
TDILFGQN GCKTLLVL+GVTS L N I+PD+YT+ +SD + L
Sbjct: 250 TDILFGQNAGCKTLLVLTGVTSESNLLDKGNKIEPDYYTSTVSDIIKL 297
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,203,613
Number of extensions: 301225
Number of successful extensions: 612
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 613
Number of HSP's successfully gapped: 3
Length of query: 365
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,364,969
Effective search space: 2216716785
Effective search space used: 2216716785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)