BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0487100 Os04g0487100|AK106016
         (420 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0487100  Galactose oxidase, central domain containing p...   772   0.0  
Os08g0128000  Galactose oxidase, central domain containing p...   600   e-172

>Os04g0487100 Galactose oxidase, central domain containing protein
          Length = 420

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/386 (96%), Positives = 373/386 (96%)

Query: 35  DFLXXXXXXXXXXXXXRIDLPGRPAALVPPSGKKQTKEKISIGSTDINATFADLPAPELQ 94
           DFL             RIDLPGRPAALVPPSGKKQTKEKISIGSTDINATFADLPAPELQ
Sbjct: 35  DFLWASSSPAAPAWSSRIDLPGRPAALVPPSGKKQTKEKISIGSTDINATFADLPAPELQ 94

Query: 95  WEEMAEAPVPRLDGAAMQIKNLLYVFAGYGTINHVHSHVDIYNFSDNTWGGRFDMPKEMA 154
           WEEMAEAPVPRLDGAAMQIKNLLYVFAGYGTINHVHSHVDIYNFSDNTWGGRFDMPKEMA
Sbjct: 95  WEEMAEAPVPRLDGAAMQIKNLLYVFAGYGTINHVHSHVDIYNFSDNTWGGRFDMPKEMA 154

Query: 155 HSHLGMVTDGRYVYVVTGQYGPQCRGPTARNFVLDTETKEWHDLPPLPVPRYAPATQLWR 214
           HSHLGMVTDGRYVYVVTGQYGPQCRGPTARNFVLDTETKEWHDLPPLPVPRYAPATQLWR
Sbjct: 155 HSHLGMVTDGRYVYVVTGQYGPQCRGPTARNFVLDTETKEWHDLPPLPVPRYAPATQLWR 214

Query: 215 GRLHVMGGSKEDRHEPGLEHWSIAVKDGKALENEWRSEVPIPRGGPHRACVVANDKLLVI 274
           GRLHVMGGSKEDRHEPGLEHWSIAVKDGKALENEWRSEVPIPRGGPHRACVVANDKLLVI
Sbjct: 215 GRLHVMGGSKEDRHEPGLEHWSIAVKDGKALENEWRSEVPIPRGGPHRACVVANDKLLVI 274

Query: 275 GGQEGDFMAKPGSPIFKCVRRSEVVYSNVYMLDDGMKWKEFPPMPKPDSHIEFAWVNVNN 334
           GGQEGDFMAKPGSPIFKCVRRSEVVYSNVYMLDDGMKWKEFPPMPKPDSHIEFAWVNVNN
Sbjct: 275 GGQEGDFMAKPGSPIFKCVRRSEVVYSNVYMLDDGMKWKEFPPMPKPDSHIEFAWVNVNN 334

Query: 335 SLIIAGGTTEKHPITKKMVLVGEVFRFNLNTLEWTVIGRLPFRIKTTLVGYWDGWLYFTS 394
           SLIIAGGTTEKHPITKKMVLVGEVFRFNLNTLEWTVIGRLPFRIKTTLVGYWDGWLYFTS
Sbjct: 335 SLIIAGGTTEKHPITKKMVLVGEVFRFNLNTLEWTVIGRLPFRIKTTLVGYWDGWLYFTS 394

Query: 395 GQRDKGPKDPSPKKVVGCMWRTKLHL 420
           GQRDKGPKDPSPKKVVGCMWRTKLHL
Sbjct: 395 GQRDKGPKDPSPKKVVGCMWRTKLHL 420



>Os08g0128000 Galactose oxidase, central domain containing protein
          Length = 410

 Score =  600 bits (1546), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 278/361 (77%), Positives = 316/361 (87%), Gaps = 2/361 (0%)

Query: 60  ALVPPSGKKQTKEKISIGSTDINATFADLPAPELQWEEMAEAPVPRLDGAAMQIKNLLYV 119
           A    SG+ + K+  + G   +NAT+AD+PAP   WEEM  APVPRLDG ++QI +LLYV
Sbjct: 52  ATAKKSGRARGKKPAAEGY--LNATYADIPAPRWDWEEMPAAPVPRLDGYSVQIGDLLYV 109

Query: 120 FAGYGTINHVHSHVDIYNFSDNTWGGRFDMPKEMAHSHLGMVTDGRYVYVVTGQYGPQCR 179
           FAGY  ++HVHSHVD+YNF+ NTW GRFDMPKEMA+SHLG+ TDGRY+Y +TGQ+GPQCR
Sbjct: 110 FAGYENLDHVHSHVDVYNFTSNTWTGRFDMPKEMANSHLGIATDGRYIYALTGQFGPQCR 169

Query: 180 GPTARNFVLDTETKEWHDLPPLPVPRYAPATQLWRGRLHVMGGSKEDRHEPGLEHWSIAV 239
            P  RNFV+DT TKEWH+LPPLPVPRYAPATQLWRGRLHVMGG KEDRHEPGLEHWS+AV
Sbjct: 170 SPINRNFVVDTVTKEWHELPPLPVPRYAPATQLWRGRLHVMGGGKEDRHEPGLEHWSLAV 229

Query: 240 KDGKALENEWRSEVPIPRGGPHRACVVANDKLLVIGGQEGDFMAKPGSPIFKCVRRSEVV 299
           KDGKALENEWR+E+ IPRGGPHRAC+VANDKL VIGGQEGDFMAKPGSPIFKCVRR EVV
Sbjct: 230 KDGKALENEWRTEIAIPRGGPHRACIVANDKLFVIGGQEGDFMAKPGSPIFKCVRRHEVV 289

Query: 300 YSNVYMLDDGMKWKEFPPMPKPDSHIEFAWVNVNNSLIIAGGTTEKHPITKKMVLVGEVF 359
           Y +VYMLDDG KWK+  P+PKP+SHIE AWV VNNS+II GGTTEKHPITKKM+LVGEVF
Sbjct: 290 YGDVYMLDDGNKWKQLSPLPKPNSHIECAWVIVNNSVIIVGGTTEKHPITKKMILVGEVF 349

Query: 360 RFNLNTLEWTVIGRLPFRIKTTLVGYWDGWLYFTSGQRDKGPKDPSPKKVVGCMWRTKLH 419
           RF+L+TL W+VIGR+PFRIKT L GYWDGWLYFTSGQRD+GP +P+PKKVVGC WRTKLH
Sbjct: 350 RFDLDTLTWSVIGRMPFRIKTALAGYWDGWLYFTSGQRDRGPDNPAPKKVVGCTWRTKLH 409

Query: 420 L 420
           L
Sbjct: 410 L 410



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,059,337
Number of extensions: 783377
Number of successful extensions: 1896
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1887
Number of HSP's successfully gapped: 2
Length of query: 420
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 317
Effective length of database: 11,657,759
Effective search space: 3695509603
Effective search space used: 3695509603
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)