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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0128000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Galactose oxidase, central domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.0389) R2 : 0.116
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.882 (0.114) R2dE : 0.123 R2E : 0.107
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.161 (0.0835) R2dN8 : 0.00979 R2N8 : -0.00617
σ : 0.726
deviance : 243.18
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1015
memory length : 5279
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
231.35 0.715 3.18 -0.444 0.338 0.974 -0.485 0.332 0.0905 0.355 1015 4766 -- --
231.49 0.709 3.18 -0.399 0.347 0.895 -0.429 -- 0.105 0.198 1015 4875 -- --
232.11 0.71 3.18 -0.421 0.343 0.961 -- 0.326 0.0944 23.6 1015 4792 -- --
232.15 0.71 3.17 -0.402 0.349 0.892 -- -- 0.108 23.6 1015 4881 -- --
239.6 0.721 3.17 -0.414 -- 0.963 -- 0.344 0.0974 -- 1015 4792 -- --
261.34 0.758 3.21 -0.496 0.345 -- -0.324 -- -0.0432 23.8 -- -- -- --
261.7 0.758 3.21 -0.481 0.349 -- -- -- -0.0408 23.3 -- -- -- --
239.68 0.721 3.17 -0.385 -- 0.895 -- -- 0.109 -- 1015 4881 -- --
235.7 0.715 3.16 -- 0.338 0.887 -- -- 0.166 23.4 1015 5252 -- --
269.33 0.767 3.2 -0.473 -- -- -- -- -0.0375 -- -- -- -- --
267.81 0.766 3.2 -- 0.344 -- -- -- 0.0128 23.2 -- -- -- --
243.18 0.726 3.15 -- -- 0.882 -- -- 0.161 -- 1015 5279 -- --
275.22 0.774 3.19 -- -- -- -- -- 0.015 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 230.47 temperature 20 10 > th dose independent rect. 2 2
2 230.82 radiation 1 1440 < th dose independent rect. 10 6
8 231.15 radiation 1 1440 > th dose independent rect. 10 6
9 231.19 radiation 1 1440 > th dose independent rect. 13 3
15 232.00 atmosphere 1015 4320 > th dose dependent rect. 24 6
17 232.20 atmosphere 1015 4320 > th dose dependent rect. 1 4
21 232.29 atmosphere 1010 4320 > th dose dependent rect. 24 1
24 232.48 atmosphere 1015 4320 > th dose independent rect. 10 1
27 232.51 atmosphere 1015 4320 < th dose independent rect. 10 1
33 232.62 atmosphere 1015 4320 > th dose dependent rect. 24 11
50 232.83 atmosphere 1015 4320 < th dose independent rect. 24 12
54 232.85 atmosphere 1015 4320 > th dose independent rect. 24 12
55 232.85 atmosphere 1015 4320 > th dose dependent rect. 24 15
64 232.93 atmosphere 1015 4320 > th dose independent rect. 24 16
69 232.99 atmosphere 1015 4320 > th dose independent rect. 24 19
77 233.01 atmosphere 1015 4320 < th dose independent rect. 24 16
85 233.03 atmosphere 1015 4320 > th dose dependent sin 6 NA
96 233.07 atmosphere 1015 4320 < th dose independent rect. 24 19
108 233.13 atmosphere 1015 4320 < th dose independent rect. 1 2
114 233.16 atmosphere 1015 4320 > th dose independent rect. 1 2
176 233.35 atmosphere 1015 4320 > th dose independent rect. 24 5
196 233.41 atmosphere 1015 4320 > th dose independent sin 4 NA
201 233.42 atmosphere 1015 4320 < th dose independent rect. 24 5
202 233.42 atmosphere 1015 4320 > th dose independent rect. 24 7
206 233.43 atmosphere 1015 4320 < th dose independent sin 4 NA
213 233.45 atmosphere 1015 4320 < th dose independent rect. 24 7
297 233.63 temperature 20 10 > th dose dependent rect. 2 2
299 233.63 atmosphere 1015 4320 > th dose dependent rect. 19 16
330 233.71 radiation 10 720 < th dose dependent rect. 13 14
398 233.86 humidity 90 10 > th dose independent rect. 19 9
418 233.90 atmosphere 1015 4320 < th dose independent rect. 5 7
461 233.97 atmosphere 1015 4320 > th dose independent rect. 5 7
564 234.11 radiation 1 1440 < th dose dependent rect. 15 1
571 234.12 atmosphere 1015 4320 > th dose independent rect. 14 22
577 234.13 atmosphere 1015 4320 > th dose dependent rect. 10 1
600 234.17 atmosphere 1015 4320 > th dose independent rect. 18 18
617 234.20 atmosphere 1015 4320 > th dose dependent no NA NA
643 234.24 atmosphere 1015 4320 > th dose independent rect. 18 22
649 234.25 atmosphere 1015 4320 < th dose independent rect. 15 21
669 234.28 atmosphere 1015 4320 < th dose independent rect. 18 18
689 234.30 atmosphere 1015 4320 > th dose independent no NA NA
699 234.30 atmosphere 1015 4320 > th dose dependent rect. 3 23
706 234.31 atmosphere 1015 4320 > th dose dependent rect. 8 23
750 234.37 atmosphere 1015 4320 > th dose independent rect. 5 23
767 234.39 atmosphere 1015 4320 < th dose independent rect. 18 22
820 234.47 atmosphere 1015 4320 < th dose independent no NA NA
872 234.54 atmosphere 1015 4320 < th dose independent rect. 5 23
906 234.58 atmosphere 1015 4320 < th dose independent rect. 10 23