Os04g0487100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose oxidase, central domain containing protein.
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Os04g0487100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactose oxidase, central domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.12 | 0.235 | 10.1 | -0.188 | 1.04 | 1.55 | -0.7 | 0.27 | -0.107 | 20.5 | 12.26 | 137 | -- | -- |
| 25.17 | 0.234 | 10.1 | -0.226 | 1.03 | 1.56 | -0.702 | -- | -0.119 | 20.5 | 12.92 | 140 | -- | -- |
| 26.66 | 0.24 | 10.1 | -0.148 | 1.04 | 1.55 | -- | 0.392 | -0.102 | 20.6 | 12.48 | 129 | -- | -- |
| 26.68 | 0.241 | 10.1 | -0.202 | 1.04 | 1.49 | -- | -- | -0.118 | 20.6 | 15.42 | 130 | -- | -- |
| 60.32 | 0.362 | 10.1 | -0.396 | -- | 1.91 | -- | -0.264 | -0.25 | -- | 16.81 | 506 | -- | -- |
| 49.85 | 0.331 | 10.1 | 0.105 | 1.23 | -- | -0.587 | -- | 0.0991 | 19.2 | -- | -- | -- | -- |
| 50.77 | 0.334 | 10.1 | 0.117 | 1.23 | -- | -- | -- | 0.098 | 19.2 | -- | -- | -- | -- |
| 60.09 | 0.361 | 10.1 | -0.287 | -- | 1.67 | -- | -- | -0.201 | -- | 20.25 | 507 | -- | -- |
| 27.63 | 0.245 | 10.1 | -- | 1.05 | 1.35 | -- | -- | -0.0845 | 20.5 | 16.14 | 130 | -- | -- |
| 130.37 | 0.534 | 10 | 0.0952 | -- | -- | -- | -- | 0.0768 | -- | -- | -- | -- | -- |
| 51.14 | 0.335 | 10.1 | -- | 1.23 | -- | -- | -- | 0.0849 | 19.2 | -- | -- | -- | -- |
| 62.18 | 0.367 | 10.1 | -- | -- | 1.58 | -- | -- | -0.162 | -- | 20.6 | 499 | -- | -- |
| 130.6 | 0.533 | 10 | -- | -- | -- | -- | -- | 0.0662 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 2 | 24.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 3 | 24.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 7 | 25.01 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 8 | 25.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 22 |
| 18 | 25.33 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 24 | 25.52 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 30 | 25.60 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 46 | 25.80 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 56 | 25.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 111 | 26.70 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 202 | 27.47 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 211 | 27.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 224 | 27.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 248 | 27.92 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 346 | 28.56 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 390 | 28.83 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 423 | 29.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 453 | 29.20 | temperature | 15 | 270 | > th | dose dependent | sin | 7 | NA |
| 578 | 29.70 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 618 | 29.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 668 | 29.91 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 899 | 30.39 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 910 | 30.42 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 18 |
| 918 | 30.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 933 | 30.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 953 | 30.49 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 16 |
| 959 | 30.50 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 966 | 30.51 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 18 |