BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0485200 Os04g0485200|AK069013
         (298 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0485200  UBX domain containing protein                       487   e-138
Os03g0636600  Expressed protein                                    66   3e-11
Os09g0401600  Zinc finger, Rad18-type putative domain contai...    65   7e-11

>Os04g0485200 UBX domain containing protein
          Length = 298

 Score =  487 bits (1254), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/298 (81%), Positives = 244/298 (81%)

Query: 1   MEAEHPHQIXXXXXXXXXXXXLCPRRRKRGDDEAAHHLVFPMDLDSXXXXXXXXXXXXXX 60
           MEAEHPHQI            LCPRRRKRGDDEAAHHLVFPMDLDS              
Sbjct: 1   MEAEHPHQITYTTTTTTSTSSLCPRRRKRGDDEAAHHLVFPMDLDSAAAAAAAAAHHQQQ 60

Query: 61  XXXTTSQDKLKALAYEYGHEFRVFSSVTFESMTSNLPAADQEEDDDFYELQPADYFNLVS 120
              TTSQDKLKALAYEYGHEFRVFSSVTFESMTSNLPAADQEEDDDFYELQPADYFNLVS
Sbjct: 61  QQQTTSQDKLKALAYEYGHEFRVFSSVTFESMTSNLPAADQEEDDDFYELQPADYFNLVS 120

Query: 121 NRIGEQSKVLKTRKMREAELAAQRAKIKKAVMRVRFPDGYILEADFHPSETVQSLMDFLK 180
           NRIGEQSKVLKTRKMREAELAAQRAKIKKAVMRVRFPDGYILEADFHPSETVQSLMDFLK
Sbjct: 121 NRIGEQSKVLKTRKMREAELAAQRAKIKKAVMRVRFPDGYILEADFHPSETVQSLMDFLK 180

Query: 181 KVISRPDLPFYLYTVPPKKRIKDTSLDFYTIGFVPGANVYFSYDLPEGSELNTDSVKSGP 240
           KVISRPDLPFYLYTVPPKKRIKDTSLDFYTIGFVPGANVYFSYDLPEGSELNTDSVKSGP
Sbjct: 181 KVISRPDLPFYLYTVPPKKRIKDTSLDFYTIGFVPGANVYFSYDLPEGSELNTDSVKSGP 240

Query: 241 YLREEIRMLDGLPIVQEPVHQPIDSTMNXXXXXXXXXXXXXFXXXXXXXXXXXXWFKR 298
           YLREEIRMLDGLPIVQEPVHQPIDSTMN             F            WFKR
Sbjct: 241 YLREEIRMLDGLPIVQEPVHQPIDSTMNSSSAHQSDVSQSDFAPPANKKPAKPKWFKR 298



>Os03g0636600 Expressed protein
          Length = 204

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 65/127 (51%), Gaps = 11/127 (8%)

Query: 79  HEFRVFSSVTFESMTSN-LPAADQEEDDDFYELQPADYFNLVSNRIG--EQSKVLKTRKM 135
           H+ RVF SV   S+  N LP       D FY L   +  N    R G  EQS +L  +  
Sbjct: 55  HQIRVFFSVAASSVAENDLP-------DYFYSLSNEEIRNEAKMRRGRLEQSWLLIPKSY 107

Query: 136 REAELAAQRAKIKKAVMRVRFPDGYILEADFHPSETVQSLMDFLKKVISRPDLPFYLYT- 194
           +E +  A R K K+A++R+ FPDG IL+  F P+E + SL +F    + +P L F L   
Sbjct: 108 KEKQALAARQKYKQALIRIPFPDGVILQGVFLPTEPISSLYEFAASALKQPSLEFDLICP 167

Query: 195 VPPKKRI 201
             P+ R+
Sbjct: 168 AGPRTRV 174



>Os09g0401600 Zinc finger, Rad18-type putative domain containing protein
          Length = 428

 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 18/154 (11%)

Query: 79  HEFRVFSSVTFESMTSN-LPAADQEEDDDFYELQPADYFNLVSNRIG--EQSKVLKTRKM 135
            + RVF SV   S+  N LP       D FY L   +  N    R    EQS++L  +  
Sbjct: 258 RQIRVFFSVAASSVAENDLP-------DSFYSLSNEEIRNEAKMRRERLEQSRLLIPKSY 310

Query: 136 REAELAAQRAKIKKAVMRVRFPDGYILEADFHPSETVQSLMDFLKKVISRPDLPFYLYT- 194
           +E +  A R K K+A++R++FPDG IL+  F P+E + SL +F+   + +P L F L   
Sbjct: 311 KEKQALAARQKYKQALIRIQFPDGVILQGVFLPAEPISSLYEFVASSLKQPSLEFDLICP 370

Query: 195 -------VPPKKRIKDTSLDFYTIGFVPGANVYF 221
                  +PP  +  + +        VP A + F
Sbjct: 371 AGPRTRVIPPFPKPGEQARTLRDEDLVPSARLTF 404



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,139,327
Number of extensions: 299079
Number of successful extensions: 749
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 748
Number of HSP's successfully gapped: 3
Length of query: 298
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 198
Effective length of database: 11,814,401
Effective search space: 2339251398
Effective search space used: 2339251398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)