Os04g0485200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UBX domain containing protein.
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Os04g0485200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UBX domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.57 | 0.247 | 9.36 | 0.464 | 0.53 | 0.398 | -0.501 | 0.891 | 0.189 | 12.9 | 29.43 | 1161 | -- | -- |
| 27.62 | 0.245 | 9.33 | 0.675 | 0.574 | 0.447 | -0.438 | -- | 0.259 | 12.8 | 29.3 | 1379 | -- | -- |
| 28.6 | 0.249 | 9.36 | 0.464 | 0.533 | 0.397 | -- | 0.763 | 0.189 | 12.9 | 29.4 | 1161 | -- | -- |
| 28.36 | 0.248 | 9.32 | 0.656 | 0.611 | 0.48 | -- | -- | 0.272 | 13 | 28.8 | 1533 | -- | -- |
| 43.78 | 0.308 | 9.34 | 0.596 | -- | 0.673 | -- | 0.406 | 0.264 | -- | 28.5 | 1125 | -- | -- |
| 38.17 | 0.29 | 9.34 | 0.521 | 0.623 | -- | -0.35 | -- | 0.209 | 12.8 | -- | -- | -- | -- |
| 38.69 | 0.291 | 9.34 | 0.508 | 0.624 | -- | -- | -- | 0.207 | 12.8 | -- | -- | -- | -- |
| 43.58 | 0.307 | 9.32 | 0.696 | -- | 0.702 | -- | -- | 0.307 | -- | 28.58 | 1124 | -- | -- |
| 39.17 | 0.292 | 9.35 | -- | 0.604 | 0.377 | -- | -- | 0.174 | 12.9 | 29.22 | 1626 | -- | -- |
| 62.99 | 0.371 | 9.35 | 0.485 | -- | -- | -- | -- | 0.195 | -- | -- | -- | -- | -- |
| 45.48 | 0.315 | 9.35 | -- | 0.616 | -- | -- | -- | 0.15 | 12.8 | -- | -- | -- | -- |
| 55.91 | 0.348 | 9.32 | -- | -- | 0.579 | -- | -- | 0.242 | -- | 28.4 | 1099 | -- | -- |
| 69.19 | 0.388 | 9.36 | -- | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.17 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 23 | 27.37 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 20 |
| 25 | 27.41 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 33 | 27.52 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 34 | 27.54 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 44 | 27.66 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 50 | 27.72 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 56 | 27.76 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 20 |
| 67 | 27.86 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 73 | 27.91 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 90 | 27.97 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 92 | 28.00 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 20 |
| 93 | 28.01 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 96 | 28.01 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 98 | 28.01 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 108 | 28.03 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 111 | 28.03 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 118 | 28.05 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 120 | 28.06 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 124 | 28.07 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 193 | 28.13 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 21 | NA |
| 284 | 28.18 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 286 | 28.18 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 293 | 28.19 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 321 | 28.19 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 336 | 28.20 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 339 | 28.21 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 364 | 28.22 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 435 | 28.27 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 451 | 28.29 | temperature | 30.0 | 1440 | < th | dose independent | sin | 0 | NA |
| 491 | 28.31 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 497 | 28.31 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 585 | 28.33 | temperature | 30.0 | 1440 | < th | dose independent | no | NA | NA |
| 651 | 28.34 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 653 | 28.34 | wind | 9.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 697 | 28.36 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 714 | 28.37 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 765 | 28.42 | temperature | 30.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 780 | 28.43 | temperature | 30.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 783 | 28.43 | temperature | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 785 | 28.43 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 903 | 28.44 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 10 |