Os03g0636600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Expressed protein.
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Os03g0636600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Expressed protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.39 | 0.227 | 8.49 | 0.737 | 0.378 | -0.568 | -0.399 | 1.76 | 0.281 | 3.35 | 26.5 | 946 | -- | -- |
| 25.75 | 0.236 | 8.56 | 0.27 | 0.301 | -0.431 | -0.199 | -- | 0.0963 | 3.53 | 28.2 | 851 | -- | -- |
| 23.76 | 0.227 | 8.49 | 0.761 | 0.366 | -0.596 | -- | 1.95 | 0.264 | 3.41 | 26.9 | 954 | -- | -- |
| 25.81 | 0.237 | 8.54 | 0.321 | 0.342 | -0.442 | -- | -- | 0.141 | 3.17 | 26.7 | 837 | -- | -- |
| 27.58 | 0.245 | 8.51 | 0.623 | -- | -0.613 | -- | 1.83 | 0.198 | -- | 28.02 | 669 | -- | -- |
| 30.62 | 0.259 | 8.56 | 0.189 | 0.388 | -- | -0.514 | -- | 0.0439 | 5.08 | -- | -- | -- | -- |
| 31.29 | 0.262 | 8.56 | 0.19 | 0.384 | -- | -- | -- | 0.0464 | 5.04 | -- | -- | -- | -- |
| 28.86 | 0.25 | 8.54 | 0.323 | -- | -0.438 | -- | -- | 0.153 | -- | 26.6 | 521 | -- | -- |
| 28.43 | 0.248 | 8.55 | -- | 0.383 | -0.377 | -- | -- | 0.106 | 3.66 | 26.7 | 883 | -- | -- |
| 39.04 | 0.292 | 8.56 | 0.203 | -- | -- | -- | -- | 0.0562 | -- | -- | -- | -- | -- |
| 32.23 | 0.266 | 8.56 | -- | 0.388 | -- | -- | -- | 0.0253 | 5.02 | -- | -- | -- | -- |
| 31.52 | 0.261 | 8.55 | -- | -- | -0.393 | -- | -- | 0.112 | -- | 26.57 | 503 | -- | -- |
| 40.13 | 0.296 | 8.57 | -- | -- | -- | -- | -- | 0.0336 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.35 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 35 | 22.88 | temperature | 25.0 | 720 | > th | dose dependent | sin | 16 | NA |
| 57 | 23.12 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 5 |
| 129 | 23.69 | temperature | 25.0 | 720 | > th | dose independent | sin | 19 | NA |
| 168 | 23.87 | temperature | 25.0 | 720 | < th | dose independent | rect. | 10 | 13 |
| 172 | 23.89 | temperature | 25.0 | 720 | > th | dose independent | rect. | 9 | 15 |
| 182 | 23.94 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 12 | 18 |
| 185 | 23.97 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 204 | 24.03 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 11 | 11 |
| 220 | 24.08 | radiation | 1.0 | 720 | < th | dose independent | rect. | 15 | 9 |
| 268 | 24.16 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 13 |
| 273 | 24.18 | radiation | 1.0 | 720 | > th | dose independent | rect. | 16 | 3 |
| 307 | 24.21 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 312 | 24.22 | temperature | 25.0 | 720 | < th | dose independent | sin | 19 | NA |
| 332 | 24.25 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 16 | 12 |
| 486 | 24.51 | temperature | 25.0 | 720 | > th | dose dependent | no | NA | NA |
| 500 | 24.53 | temperature | 25.0 | 720 | < th | dose independent | rect. | 3 | 21 |
| 586 | 24.65 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 15 |
| 609 | 24.70 | radiation | 1.0 | 720 | > th | dose independent | rect. | 8 | 11 |
| 638 | 24.72 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 15 |
| 671 | 24.77 | radiation | 1.0 | 720 | < th | dose dependent | sin | 15 | NA |
| 689 | 24.79 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 700 | 24.81 | temperature | 25.0 | 720 | < th | dose independent | rect. | 10 | 20 |
| 704 | 24.82 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 711 | 24.82 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 732 | 24.83 | temperature | 30.0 | 720 | < th | dose dependent | sin | 19 | NA |
| 748 | 24.84 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 11 | 7 |
| 766 | 24.87 | temperature | 10.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 783 | 24.89 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 798 | 24.91 | wind | 5.0 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 799 | 24.91 | wind | 5.0 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 810 | 24.92 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 817 | 24.93 | radiation | 1.0 | 720 | > th | dose independent | sin | 16 | NA |
| 818 | 24.93 | wind | 5.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 822 | 24.93 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 11 | 10 |
| 830 | 24.95 | wind | 5.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 838 | 24.96 | wind | 5.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 855 | 24.97 | temperature | 25.0 | 720 | > th | dose independent | rect. | 14 | 22 |
| 926 | 25.02 | wind | 5.0 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 937 | 25.03 | wind | 5.0 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 938 | 25.03 | wind | 5.0 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 956 | 25.04 | wind | 5.0 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 963 | 25.04 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 11 | 5 |
| 969 | 25.05 | wind | 5.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 974 | 25.05 | wind | 5.0 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 975 | 25.05 | wind | 5.0 | 43200 | < th | dose independent | rect. | 11 | 8 |
| 992 | 25.06 | wind | 5.0 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 994 | 25.06 | wind | 5.0 | 43200 | > th | dose independent | rect. | 11 | 8 |