BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0636600 Os03g0636600|AK069223
         (204 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0636600  Expressed protein                                   413   e-116
Os09g0401600  Zinc finger, Rad18-type putative domain contai...   358   1e-99
Os04g0485200  UBX domain containing protein                        67   1e-11

>Os03g0636600 Expressed protein
          Length = 204

 Score =  413 bits (1061), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 1   MDEVPGDARLGWIRQAVLLLQRARPSTPPPKQADAKGTRPDGVGEQQGVKRPVDHQIRVF 60
           MDEVPGDARLGWIRQAVLLLQRARPSTPPPKQADAKGTRPDGVGEQQGVKRPVDHQIRVF
Sbjct: 1   MDEVPGDARLGWIRQAVLLLQRARPSTPPPKQADAKGTRPDGVGEQQGVKRPVDHQIRVF 60

Query: 61  FSVAASSVAENDLPDYFYSLSNEEIRNEAKMRRGRLEQSWLLIPKSYKEKQALAARQKYK 120
           FSVAASSVAENDLPDYFYSLSNEEIRNEAKMRRGRLEQSWLLIPKSYKEKQALAARQKYK
Sbjct: 61  FSVAASSVAENDLPDYFYSLSNEEIRNEAKMRRGRLEQSWLLIPKSYKEKQALAARQKYK 120

Query: 121 QALIRIPFPDGVILQGVFLPTEPISSLYEFAASALKQPSLEFDLICPAGPRTRVTPPFPQ 180
           QALIRIPFPDGVILQGVFLPTEPISSLYEFAASALKQPSLEFDLICPAGPRTRVTPPFPQ
Sbjct: 121 QALIRIPFPDGVILQGVFLPTEPISSLYEFAASALKQPSLEFDLICPAGPRTRVTPPFPQ 180

Query: 181 PGERAHTLLDEDLVPSARLTFKPK 204
           PGERAHTLLDEDLVPSARLTFKPK
Sbjct: 181 PGERAHTLLDEDLVPSARLTFKPK 204



>Os09g0401600 Zinc finger, Rad18-type putative domain containing protein
          Length = 428

 Score =  358 bits (919), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 180/204 (88%), Positives = 188/204 (92%)

Query: 1   MDEVPGDARLGWIRQAVLLLQRARPSTPPPKQADAKGTRPDGVGEQQGVKRPVDHQIRVF 60
           MDEVPGDARLG IRQAVLLL+RARPSTPP  QADAK T P+GV E+QG+K+PVD QIRVF
Sbjct: 204 MDEVPGDARLGGIRQAVLLLERARPSTPPQTQADAKETCPNGVSEEQGIKKPVDRQIRVF 263

Query: 61  FSVAASSVAENDLPDYFYSLSNEEIRNEAKMRRGRLEQSWLLIPKSYKEKQALAARQKYK 120
           FSVAASSVAENDLPD FYSLSNEEIRNEAKMRR RLEQS LLIPKSYKEKQALAARQKYK
Sbjct: 264 FSVAASSVAENDLPDSFYSLSNEEIRNEAKMRRERLEQSRLLIPKSYKEKQALAARQKYK 323

Query: 121 QALIRIPFPDGVILQGVFLPTEPISSLYEFAASALKQPSLEFDLICPAGPRTRVTPPFPQ 180
           QALIRI FPDGVILQGVFLP EPISSLYEF AS+LKQPSLEFDLICPAGPRTRV PPFP+
Sbjct: 324 QALIRIQFPDGVILQGVFLPAEPISSLYEFVASSLKQPSLEFDLICPAGPRTRVIPPFPK 383

Query: 181 PGERAHTLLDEDLVPSARLTFKPK 204
           PGE+A TL DEDLVPSARLTFKPK
Sbjct: 384 PGEQARTLRDEDLVPSARLTFKPK 407



>Os04g0485200 UBX domain containing protein
          Length = 298

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 65/127 (51%), Gaps = 11/127 (8%)

Query: 55  HQIRVFFSVAASSVAENDLP-------DYFYSLSNEEIRNEAKMRRGRLEQSWLLIPKSY 107
           H+ RVF SV   S+  N LP       D FY L   +  N    R G  EQS +L  +  
Sbjct: 79  HEFRVFSSVTFESMTSN-LPAADQEEDDDFYELQPADYFNLVSNRIG--EQSKVLKTRKM 135

Query: 108 KEKQALAARQKYKQALIRIPFPDGVILQGVFLPTEPISSLYEFAASALKQPSLEFDLICP 167
           +E +  A R K K+A++R+ FPDG IL+  F P+E + SL +F    + +P L F L   
Sbjct: 136 REAELAAQRAKIKKAVMRVRFPDGYILEADFHPSETVQSLMDFLKKVISRPDLPFYLYT- 194

Query: 168 AGPRTRV 174
             P+ R+
Sbjct: 195 VPPKKRI 201



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,140,583
Number of extensions: 368137
Number of successful extensions: 1301
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1301
Number of HSP's successfully gapped: 3
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)