BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0476800 Os04g0476800|AK070908
(881 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0476800 Similar to TA5 protein (Fragment) 1583 0.0
Os02g0593700 Similar to TA4 protein (Fragment) 376 e-104
>Os04g0476800 Similar to TA5 protein (Fragment)
Length = 881
Score = 1583 bits (4098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 778/881 (88%), Positives = 778/881 (88%)
Query: 1 MSRRRDAAPTAREGERDLVVKVKFGGTLKRFTAFVNGPHFDLNLAALRSKIASAFKFNPD 60
MSRRRDAAPTAREGERDLVVKVKFGGTLKRFTAFVNGPHFDLNLAALRSKIASAFKFNPD
Sbjct: 1 MSRRRDAAPTAREGERDLVVKVKFGGTLKRFTAFVNGPHFDLNLAALRSKIASAFKFNPD 60
Query: 61 TEFVLTYTXXXXXXXXXXXXXXXXXXXXXQRLNPLRINVELKSSSDGVHQTKQQVLDSIS 120
TEFVLTYT QRLNPLRINVELKSSSDGVHQTKQQVLDSIS
Sbjct: 61 TEFVLTYTDEDGDVVILDDDSDLCDAAISQRLNPLRINVELKSSSDGVHQTKQQVLDSIS 120
Query: 121 VMSTALEDQLAQVKLAIDEALKFVPEQVPTVLAKISHDXXXXXXXXXXXXXXXXXXXXKL 180
VMSTALEDQLAQVKLAIDEALKFVPEQVPTVLAKISHD KL
Sbjct: 121 VMSTALEDQLAQVKLAIDEALKFVPEQVPTVLAKISHDLRSKAASSAPSLADLLDRLAKL 180
Query: 181 MAPKSKMQXXXXXXXXXXXXXXXXXXXXXXLNIKNDTELMAVSASNPLDMHNSGSTKSLG 240
MAPKSKMQ LNIKNDTELMAVSASNPLDMHNSGSTKSLG
Sbjct: 181 MAPKSKMQSSSGSADGSSGSSSGRGQTLGSLNIKNDTELMAVSASNPLDMHNSGSTKSLG 240
Query: 241 LKGVLLDDIKAQAEHVSGYPYYVDTLSGWVKVDNKGSTNAQSKGKSVTSSAVPQVTSIGH 300
LKGVLLDDIKAQAEHVSGYPYYVDTLSGWVKVDNKGSTNAQSKGKSVTSSAVPQVTSIGH
Sbjct: 241 LKGVLLDDIKAQAEHVSGYPYYVDTLSGWVKVDNKGSTNAQSKGKSVTSSAVPQVTSIGH 300
Query: 301 GAPTVHSAPASDCGEGLRSDLFWTQLGLSSESFGPNGQIGGDLNSTCXXXXXXXXXXLQS 360
GAPTVHSAPASDCGEGLRSDLFWTQLGLSSESFGPNGQIGGDLNSTC LQS
Sbjct: 301 GAPTVHSAPASDCGEGLRSDLFWTQLGLSSESFGPNGQIGGDLNSTCPPPPLFPRYPLQS 360
Query: 361 LRADKSSIKGGCSYPPCICKSSTSKPENLSHYPVQSLQADRSLKGGHYFPPCTCKSNTSK 420
LRADKSSIKGGCSYPPCICKSSTSKPENLSHYPVQSLQADRSLKGGHYFPPCTCKSNTSK
Sbjct: 361 LRADKSSIKGGCSYPPCICKSSTSKPENLSHYPVQSLQADRSLKGGHYFPPCTCKSNTSK 420
Query: 421 PDNLSPVGLYGPYSEGSSCNRCPYRDLSDKHESMAQHTLHRWIQCDGCGVTPIAGSRYKS 480
PDNLSPVGLYGPYSEGSSCNRCPYRDLSDKHESMAQHTLHRWIQCDGCGVTPIAGSRYKS
Sbjct: 421 PDNLSPVGLYGPYSEGSSCNRCPYRDLSDKHESMAQHTLHRWIQCDGCGVTPIAGSRYKS 480
Query: 481 NIKDDYDLCNTCFSRMGNVNEYTRIDRPSFGSRRCRDLNQNQMLFPHLRQLHDCRFIKDV 540
NIKDDYDLCNTCFSRMGNVNEYTRIDRPSFGSRRCRDLNQNQMLFPHLRQLHDCRFIKDV
Sbjct: 481 NIKDDYDLCNTCFSRMGNVNEYTRIDRPSFGSRRCRDLNQNQMLFPHLRQLHDCRFIKDV 540
Query: 541 TVPDGTVMAPSTPFTKIWRIHNNGSSMWPYGTCLTWVGGHLFARNSSVKLGISVDGFPID 600
TVPDGTVMAPSTPFTKIWRIHNNGSSMWPYGTCLTWVGGHLFARNSSVKLGISVDGFPID
Sbjct: 541 TVPDGTVMAPSTPFTKIWRIHNNGSSMWPYGTCLTWVGGHLFARNSSVKLGISVDGFPID 600
Query: 601 QEIDVGVDFVTPAKPGGYVSYWRLASPTGQMFGQRVWVFIQVEHPVKTSSNKQSAAINLN 660
QEIDVGVDFVTPAKPGGYVSYWRLASPTGQMFGQRVWVFIQVEHPVKTSSNKQSAAINLN
Sbjct: 601 QEIDVGVDFVTPAKPGGYVSYWRLASPTGQMFGQRVWVFIQVEHPVKTSSNKQSAAINLN 660
Query: 661 MPPEGSNTEWKHSVDANIQSADIVGKYSGSTITDPLAHALYHEATKPMEPELVSSAVPSV 720
MPPEGSNTEWKHSVDANIQSADIVGKYSGSTITDPLAHALYHEATKPMEPELVSSAVPSV
Sbjct: 661 MPPEGSNTEWKHSVDANIQSADIVGKYSGSTITDPLAHALYHEATKPMEPELVSSAVPSV 720
Query: 721 PRAFESVLVPATDLLTSSAGAEKASKPAATPGPAPQAVPLPKXXXXXXXXXXXXXXXXXX 780
PRAFESVLVPATDLLTSSAGAEKASKPAATPGPAPQAVPLPK
Sbjct: 721 PRAFESVLVPATDLLTSSAGAEKASKPAATPGPAPQAVPLPKPVSIPASGPAPAPVSATT 780
Query: 781 XXXXXXXXXXXXEPTAPAAAIGMPSATARAASCLPTEPSSDHISAVEDNMLRELGQMGFG 840
EPTAPAAAIGMPSATARAASCLPTEPSSDHISAVEDNMLRELGQMGFG
Sbjct: 781 AAPVGAAAAPISEPTAPAAAIGMPSATARAASCLPTEPSSDHISAVEDNMLRELGQMGFG 840
Query: 841 QVDLNKEIIRRNEYNLEQSIDELCGILEWDALHDELHELGI 881
QVDLNKEIIRRNEYNLEQSIDELCGILEWDALHDELHELGI
Sbjct: 841 QVDLNKEIIRRNEYNLEQSIDELCGILEWDALHDELHELGI 881
>Os02g0593700 Similar to TA4 protein (Fragment)
Length = 845
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 210/448 (46%), Positives = 261/448 (58%), Gaps = 57/448 (12%)
Query: 446 DLSDKHESMAQHTLHRWIQCDGCGVTPIAGSRYKSNIKDDYDLCNTCFSRMGNVNEYTRI 505
DL + E+ T HRWIQCDGCGV PI G RYKS K+DYDLC+ CF RMGN EYTRI
Sbjct: 411 DLGNNIENSPARTFHRWIQCDGCGVQPIVGPRYKSKTKEDYDLCDACFHRMGNEVEYTRI 470
Query: 506 DRPSFGSRRCRDLN-----QNQMLFPHLRQLHDCRFIKDVTVPDGTVMAPSTPFTKIWRI 560
D+P R RD ++ R+ + RFI DVTV DGT+MAPSTPFTKIWR+
Sbjct: 471 DKPLLPQRLLRDPTLCRKIHSRAAMKSKREKLESRFILDVTVLDGTLMAPSTPFTKIWRM 530
Query: 561 HNNGSSMWPYGTCLTWVGGHLFARNSSVKLGISVDGFPIDQEIDVGVDFVTPAKPGGYVS 620
HNNGS MWP GT L WVGG FA + V L I VDGFP+DQEIDV VDFV PA+PG Y+S
Sbjct: 531 HNNGSIMWPLGTQLIWVGGDQFALQTYVPLEIPVDGFPVDQEIDVAVDFVAPARPGRYIS 590
Query: 621 YWRLASPTGQMFGQRVWVFIQVEHPVKTSSNKQSAAINLNMPPEGSNTEWKHSVDANIQS 680
YWRLASP+GQ FGQRVWV IQVE P S+N+ +AAINLN+PPE + T + +D NI+
Sbjct: 591 YWRLASPSGQKFGQRVWVHIQVEDPSFVSNNR-TAAINLNLPPESNITNTSNLIDVNIEP 649
Query: 681 AD-IVGKYSGSTITDPLAHALYHEATKPMEPELVSSAVPSVPRAFESVLVPATDLLTSSA 739
D + ++ ST + L H ++H+ +P PE VP V + + L P D+ S+
Sbjct: 650 VDQVFNQHVNSTNKELLEHLIHHQIDEPKNPEPAPLPVPIV--SSTTSLHPIIDVDVPSS 707
Query: 740 GAEKASKPA-ATPGPAPQAVPLPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPTAPA 798
A P P P P P+P PT
Sbjct: 708 STAAAFVPVFDEPAPEPAVTPVP--------------------------------PTVNV 735
Query: 799 AAIGMPSATARAASCLPTEPSSDHISAVEDNML-----RELGQMGFGQVDLNKEIIRRNE 853
A P++ + SSDH DN+ +EL +MGF QVDLNKEI+R+N+
Sbjct: 736 PAGNAPASVGAS--------SSDHHGI--DNLTEEKLLKELEEMGFRQVDLNKEILRQNK 785
Query: 854 YNLEQSIDELCGILEWDALHDELHELGI 881
YNLEQS+D+LCG+ EWD L +EL E+G
Sbjct: 786 YNLEQSVDDLCGVSEWDPLLEELQEMGF 813
Score = 146 bits (368), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 144/298 (48%), Gaps = 22/298 (7%)
Query: 11 AREGERDLVVKVKFGGTLKRFTAFVNGPHFDLNLAALRSKIASAFKFNPDTEFVLTYTXX 70
+R E D+V+KVK+G TLKRF +V GP F LNL+ALRSKIASAFKF D +F+LTYT
Sbjct: 14 SRPDEWDVVLKVKYGETLKRFGGYVQGPQFSLNLSALRSKIASAFKFGSDVDFILTYTDE 73
Query: 71 XXXXXXXXXXXXXXXXXXXQRLNPLRINVELKSSSDGVHQTKQQVLDSISVMSTALEDQL 130
Q+LNPLRINV+L +S Q KQQ D+I + ST ED L
Sbjct: 74 DGDIVMLDDDDDLHDAAIHQKLNPLRINVQLNNSHTAAPQAKQQDSDNIPLRSTTTEDPL 133
Query: 131 AQVKLAIDEAL-----KFVPEQVPTVLAKISHDXXXXXXXXXXXXXXXXXXXXKLMAPKS 185
A +K IDE L K + E VP LAK+SH+ KL+ P S
Sbjct: 134 AHIKSVIDEVLKPISMKSIQEPVPETLAKLSHE---VLEAASPQLAELIKPFVKLVTP-S 189
Query: 186 KMQXXXXXXXXXXXXXXXXXXXXXXLNIKNDTELMAVSASNPLDMHNSGSTKSLGLKGVL 245
++ ++ S PLD NS S+ + GLK +
Sbjct: 190 NNNPSNGHADGSCSSSTGLPQTQVDPKTNDEPKIDTSLGSQPLDTQNSKSSGARGLKTLS 249
Query: 246 LD-----DIK-AQAEHVSGYPYYVDTL-------SGWVKVDNKGSTNAQSKGKSVTSS 290
++ +K +Q + S YP + L SG K +KG ++AQSKGKSV +S
Sbjct: 250 VEAPATSGVKSSQGQQASLYPSIEELLFSPFLPNSGDDKSASKGISDAQSKGKSVMTS 307
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,013,997
Number of extensions: 1234914
Number of successful extensions: 3945
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3934
Number of HSP's successfully gapped: 4
Length of query: 881
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 771
Effective length of database: 11,292,261
Effective search space: 8706333231
Effective search space used: 8706333231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)