Os02g0593700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TA4 protein (Fragment).
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Os02g0593700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TA4 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.35 | 0.227 | 14.3 | 1.52 | 0.982 | -1.09 | 0.476 | 1.9 | 0.606 | 22 | 19.96 | 91 | -- | -- |
| 26.35 | 0.239 | 14.3 | 1.2 | 1.09 | -1.16 | 0.248 | -- | 0.51 | 22 | 15.13 | 209 | -- | -- |
| 24.11 | 0.229 | 14.3 | 1.47 | 1.01 | -1.08 | -- | 1.69 | 0.593 | 22 | 20.1 | 122 | -- | -- |
| 26.39 | 0.239 | 14.3 | 1.18 | 1 | -1.16 | -- | -- | 0.53 | 22.1 | 16.11 | 113 | -- | -- |
| 69.47 | 0.39 | 14.2 | 1.53 | -- | -1.52 | -- | 1.63 | 0.662 | -- | 20.1 | 122 | -- | -- |
| 41.07 | 0.3 | 14.3 | 0.954 | 1.13 | -- | 0.198 | -- | 0.339 | 23.3 | -- | -- | -- | -- |
| 41.24 | 0.301 | 14.3 | 0.946 | 1.12 | -- | -- | -- | 0.338 | 23.3 | -- | -- | -- | -- |
| 71.02 | 0.394 | 14.3 | 1.29 | -- | -1.61 | -- | -- | 0.593 | -- | 17.6 | 5 | -- | -- |
| 59.09 | 0.36 | 14.4 | -- | 0.998 | -0.581 | -- | -- | 0.313 | 22.7 | 22.09 | 90 | -- | -- |
| 120.31 | 0.513 | 14.3 | 0.974 | -- | -- | -- | -- | 0.349 | -- | -- | -- | -- | -- |
| 64.81 | 0.377 | 14.4 | -- | 1.13 | -- | -- | -- | 0.233 | 23.4 | -- | -- | -- | -- |
| 111.7 | 0.494 | 14.3 | -- | -- | -1.19 | -- | -- | 0.405 | -- | 20.2 | 6 | -- | -- |
| 145.34 | 0.563 | 14.3 | -- | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.96 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 2 | 23.24 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 3 | 23.32 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 6 | 23.35 | temperature | 20.0 | 90 | > th | dose dependent | no | NA | NA |
| 8 | 23.47 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 19 | 23.74 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 33 | 23.89 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 35 | 23.93 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 51 | 24.26 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 52 | 24.26 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 57 | 24.29 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 63 | 24.36 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 135 | 24.92 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 156 | 25.03 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 160 | 25.05 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 161 | 25.07 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 170 | 25.12 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 201 | 25.29 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 17 | NA |
| 202 | 25.29 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 11 |
| 205 | 25.30 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 206 | 25.30 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 227 | 25.30 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 231 | 25.31 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 233 | 25.32 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 11 | 13 |
| 234 | 25.32 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 4 | 19 |
| 237 | 25.32 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 239 | 25.33 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 247 | 25.33 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 18 |
| 252 | 25.34 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 316 | 25.39 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 323 | 25.40 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 399 | 25.45 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 410 | 25.45 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 415 | 25.46 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 445 | 25.49 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 463 | 25.50 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 475 | 25.51 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 484 | 25.51 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 485 | 25.52 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 486 | 25.52 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 518 | 25.55 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 535 | 25.56 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 537 | 25.57 | temperature | 30.0 | 30 | < th | dose dependent | no | NA | NA |
| 552 | 25.58 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 561 | 25.59 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 580 | 25.63 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 607 | 25.66 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 668 | 25.75 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 672 | 25.75 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 700 | 25.79 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 701 | 25.79 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 730 | 25.84 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 744 | 25.86 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 767 | 25.88 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 778 | 25.90 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 787 | 25.91 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 793 | 25.92 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 801 | 25.93 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 815 | 25.95 | temperature | 20.0 | 90 | > th | dose dependent | sin | 20 | NA |
| 865 | 26.01 | temperature | 20.0 | 270 | > th | dose dependent | sin | 23 | NA |
| 903 | 26.05 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 934 | 26.09 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 944 | 26.10 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 946 | 26.10 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 11 | 5 |