BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0593700 Os02g0593700|AK072838
(845 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G24690.1 | chr4:12741191-12744202 FORWARD LENGTH=705 253 4e-67
>AT4G24690.1 | chr4:12741191-12744202 FORWARD LENGTH=705
Length = 704
Score = 253 bits (645), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 120/225 (53%), Positives = 153/225 (68%), Gaps = 16/225 (7%)
Query: 423 TFHRWIQCDGCGVQPIVGPRYKSKTKEDYDLCDACFHRMGNEVEYTRIDKPLLPQRL--L 480
FH+ I+CDGCGV PI GPR+KSK KEDYDLC C+ MGNE +YTR+DKP+ Q L
Sbjct: 284 VFHKGIRCDGCGVLPITGPRFKSKVKEDYDLCTICYSVMGNEGDYTRMDKPVSVQHLHPF 343
Query: 481 RDPT-----------LCRKIHSRAAMKSKREKLESRFILDVTVLDGTLMAPSTPFTKIWR 529
R P + R + A ++ R KL+SRF+LDV V+DGT++APS PFTKIW+
Sbjct: 344 RGPFTQFPNPWLSHPVPRATNGGAPLRCTRPKLDSRFVLDVNVIDGTVVAPSAPFTKIWK 403
Query: 530 MHNNGSIMWPLGTQLIWVGGDQFALQTYVPLEIPVDGFPVDQEIDVAVDFVAPARPGRYI 589
M N+GS++WP GTQ++W+GGD+F V L+IP +G P+ E+DV VDFVAP PGRYI
Sbjct: 404 MRNSGSLVWPQGTQIVWIGGDRFCNSLSVDLQIPKEGVPIYSELDVKVDFVAPELPGRYI 463
Query: 590 SYWRLASPSGQKFGQRVWVHIQVEDPSFVSN--NRTAAINLNLPP 632
SYWR+A+ G KFGQRVWV I V D S ++ N +NLN P
Sbjct: 464 SYWRMATSDGAKFGQRVWVLIHV-DASLKNSVVNEFHGLNLNASP 507
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 63/75 (84%)
Query: 769 MGFRQVDLNKEILRQNKYNLEQSVDDLCGVSEWDPLLEELQEMGFEDTEINKEMLEKNGG 828
MGF+++DLNKEILR N+YNLEQSVD LCGVSEWDP+LEELQEMGF D NK +L+KN G
Sbjct: 629 MGFKEIDLNKEILRDNEYNLEQSVDALCGVSEWDPILEELQEMGFCDDVTNKRLLKKNNG 688
Query: 829 SIKRAVMDLIAREKK 843
SIK VMDL+ EK+
Sbjct: 689 SIKGVVMDLLTGEKE 703
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 17/170 (10%)
Query: 21 VVLKVKYGETLKRFGGYVQG-PQFSLNLSALRSKIASAFKFGSDVDFILTYTXXXXXXXX 79
+V+KV YG L+RF V+ Q L ++ L+ KIA+ F +D + LTY+
Sbjct: 8 LVVKVSYGGVLRRFRVPVKANGQLDLEMAGLKEKIAALFNLSADAELSLTYSDEDGDVVA 67
Query: 80 XXXXXXXXXAAIHQKLNPLRINVQLN-NSHTAAPQAKQQDSDNIPLRSTTTEDPLAHIKS 138
+Q+L L+INV ++++AAP++ + +P++ I+
Sbjct: 68 LVDDNDLFDVT-NQRLKFLKINVNAGVSTNSAAPESSGSST------PAGMPNPVSKIQK 120
Query: 139 VIDEVLKPISMKSIQEPVPETLAKLSHEVLEAA---SPQLAELIKPFVKL 185
I++VL ++ P+ +T++K+ ++ A SP + E++ KL
Sbjct: 121 GINDVL-----MAVPNPMRDTISKVYMDLASKASTSSPVVGEMLDCISKL 165
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,276,424
Number of extensions: 716290
Number of successful extensions: 1741
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1739
Number of HSP's successfully gapped: 3
Length of query: 845
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 738
Effective length of database: 8,173,057
Effective search space: 6031716066
Effective search space used: 6031716066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 116 (49.3 bits)