BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0593700 Os02g0593700|AK072838
(845 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0593700 Similar to TA4 protein (Fragment) 1483 0.0
Os04g0476800 Similar to TA5 protein (Fragment) 316 4e-86
>Os02g0593700 Similar to TA4 protein (Fragment)
Length = 845
Score = 1483 bits (3838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/845 (87%), Positives = 739/845 (87%)
Query: 1 MSGRSSPMYEGLASRPDEWDVVLKVKYGETLKRFGGYVQGPQFSLNLSALRSKIASAFKF 60
MSGRSSPMYEGLASRPDEWDVVLKVKYGETLKRFGGYVQGPQFSLNLSALRSKIASAFKF
Sbjct: 1 MSGRSSPMYEGLASRPDEWDVVLKVKYGETLKRFGGYVQGPQFSLNLSALRSKIASAFKF 60
Query: 61 GSDVDFILTYTXXXXXXXXXXXXXXXXXAAIHQKLNPLRINVQLNNSHTAAPQAKQQDSD 120
GSDVDFILTYT AAIHQKLNPLRINVQLNNSHTAAPQAKQQDSD
Sbjct: 61 GSDVDFILTYTDEDGDIVMLDDDDDLHDAAIHQKLNPLRINVQLNNSHTAAPQAKQQDSD 120
Query: 121 NIPLRSTTTEDPLAHIKSVIDEVLKPISMKSIQEPVPETLAKLSHEVLEAASPQLAELIK 180
NIPLRSTTTEDPLAHIKSVIDEVLKPISMKSIQEPVPETLAKLSHEVLEAASPQLAELIK
Sbjct: 121 NIPLRSTTTEDPLAHIKSVIDEVLKPISMKSIQEPVPETLAKLSHEVLEAASPQLAELIK 180
Query: 181 PFVKLVTPSNNNPSNGHADGSCSSSTGLPQTQVDPKTNDEPKIDTSLGSQPLDTQNSKSS 240
PFVKLVTPSNNNPSNGHADGSCSSSTGLPQTQVDPKTNDEPKIDTSLGSQPLDTQNSKSS
Sbjct: 181 PFVKLVTPSNNNPSNGHADGSCSSSTGLPQTQVDPKTNDEPKIDTSLGSQPLDTQNSKSS 240
Query: 241 GARGLKTLSVEAPATSGVKSSQGQQASLYPSIEELLFSPFLPNSGDDKSASKGISDAQSK 300
GARGLKTLSVEAPATSGVKSSQGQQASLYPSIEELLFSPFLPNSGDDKSASKGISDAQSK
Sbjct: 241 GARGLKTLSVEAPATSGVKSSQGQQASLYPSIEELLFSPFLPNSGDDKSASKGISDAQSK 300
Query: 301 GKSVMTSXXXXXXXXXXXXXXXXXXXSLNDWSQPPARGSTFYPSIWQSEADPKANSDSRW 360
GKSVMTS SLNDWSQPPARGSTFYPSIWQSEADPKANSDSRW
Sbjct: 301 GKSVMTSATPPTPPAAPAFRPAPPIPSLNDWSQPPARGSTFYPSIWQSEADPKANSDSRW 360
Query: 361 RVPLCRAGHPFQXXXXXXXXXXXXXXXXXXXXXXHFPYPXXXXXXXXXXXXXXNNIENSP 420
RVPLCRAGHPFQ HFPYP NNIENSP
Sbjct: 361 RVPLCRAGHPFQPHAPLSRPPPPMPAPMSYGPSPHFPYPGRLLSSGHLHGDLGNNIENSP 420
Query: 421 ARTFHRWIQCDGCGVQPIVGPRYKSKTKEDYDLCDACFHRMGNEVEYTRIDKPLLPQRLL 480
ARTFHRWIQCDGCGVQPIVGPRYKSKTKEDYDLCDACFHRMGNEVEYTRIDKPLLPQRLL
Sbjct: 421 ARTFHRWIQCDGCGVQPIVGPRYKSKTKEDYDLCDACFHRMGNEVEYTRIDKPLLPQRLL 480
Query: 481 RDPTLCRKIHSRAAMKSKREKLESRFILDVTVLDGTLMAPSTPFTKIWRMHNNGSIMWPL 540
RDPTLCRKIHSRAAMKSKREKLESRFILDVTVLDGTLMAPSTPFTKIWRMHNNGSIMWPL
Sbjct: 481 RDPTLCRKIHSRAAMKSKREKLESRFILDVTVLDGTLMAPSTPFTKIWRMHNNGSIMWPL 540
Query: 541 GTQLIWVGGDQFALQTYVPLEIPVDGFPVDQEIDVAVDFVAPARPGRYISYWRLASPSGQ 600
GTQLIWVGGDQFALQTYVPLEIPVDGFPVDQEIDVAVDFVAPARPGRYISYWRLASPSGQ
Sbjct: 541 GTQLIWVGGDQFALQTYVPLEIPVDGFPVDQEIDVAVDFVAPARPGRYISYWRLASPSGQ 600
Query: 601 KFGQRVWVHIQVEDPSFVSNNRTAAINLNLPPESNITNTSNLIDVNIEPVDQVFNQHVNS 660
KFGQRVWVHIQVEDPSFVSNNRTAAINLNLPPESNITNTSNLIDVNIEPVDQVFNQHVNS
Sbjct: 601 KFGQRVWVHIQVEDPSFVSNNRTAAINLNLPPESNITNTSNLIDVNIEPVDQVFNQHVNS 660
Query: 661 TNKELLEHLIHHQIDEPKNPEPAPLPVPIVSSTTSLHPIIDVDVPSSSTAAAFVPVFDXX 720
TNKELLEHLIHHQIDEPKNPEPAPLPVPIVSSTTSLHPIIDVDVPSSSTAAAFVPVFD
Sbjct: 661 TNKELLEHLIHHQIDEPKNPEPAPLPVPIVSSTTSLHPIIDVDVPSSSTAAAFVPVFDEP 720
Query: 721 XXXXXXXXXXXXXXXXXXXXXXSVGASSSDHHGIDNLTXXXXXXXXXXMGFRQVDLNKEI 780
SVGASSSDHHGIDNLT MGFRQVDLNKEI
Sbjct: 721 APEPAVTPVPPTVNVPAGNAPASVGASSSDHHGIDNLTEEKLLKELEEMGFRQVDLNKEI 780
Query: 781 LRQNKYNLEQSVDDLCGVSEWDPLLEELQEMGFEDTEINKEMLEKNGGSIKRAVMDLIAR 840
LRQNKYNLEQSVDDLCGVSEWDPLLEELQEMGFEDTEINKEMLEKNGGSIKRAVMDLIAR
Sbjct: 781 LRQNKYNLEQSVDDLCGVSEWDPLLEELQEMGFEDTEINKEMLEKNGGSIKRAVMDLIAR 840
Query: 841 EKKDQ 845
EKKDQ
Sbjct: 841 EKKDQ 845
>Os04g0476800 Similar to TA5 protein (Fragment)
Length = 881
Score = 316 bits (810), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 154/275 (56%), Positives = 185/275 (67%), Gaps = 7/275 (2%)
Query: 417 ENSPARTFHRWIQCDGCGVQPIVGPRYKSKTKEDYDLCDACFHRMGNEVEYTRIDKPLLP 476
E+ T HRWIQCDGCGV PI G RYKS K+DYDLC+ CF RMGN EYTRID+P
Sbjct: 452 ESMAQHTLHRWIQCDGCGVTPIAGSRYKSNIKDDYDLCNTCFSRMGNVNEYTRIDRPSFG 511
Query: 477 QRLLRDPTLCRKIHSRAAMKSKREKLESRFILDVTVLDGTLMAPSTPFTKIWRMHNNGSI 536
R RD ++ R+ + RFI DVTV DGT+MAPSTPFTKIWR+HNNGS
Sbjct: 512 SRRCRDLN-----QNQMLFPHLRQLHDCRFIKDVTVPDGTVMAPSTPFTKIWRIHNNGSS 566
Query: 537 MWPLGTQLIWVGGDQFALQTYVPLEIPVDGFPVDQEIDVAVDFVAPARPGRYISYWRLAS 596
MWP GT L WVGG FA + V L I VDGFP+DQEIDV VDFV PA+PG Y+SYWRLAS
Sbjct: 567 MWPYGTCLTWVGGHLFARNSSVKLGISVDGFPIDQEIDVGVDFVTPAKPGGYVSYWRLAS 626
Query: 597 PSGQKFGQRVWVHIQVEDPSFVSNNR-TAAINLNLPPESNITNTSNLIDVNIEPVDQVFN 655
P+GQ FGQRVWV IQVE P S+N+ +AAINLN+PPE + T + +D NI+ D +
Sbjct: 627 PTGQMFGQRVWVFIQVEHPVKTSSNKQSAAINLNMPPEGSNTEWKHSVDANIQSAD-IVG 685
Query: 656 QHVNSTNKELLEHLIHHQIDEPKNPEPAPLPVPIV 690
++ ST + L H ++H+ +P PE VP V
Sbjct: 686 KYSGSTITDPLAHALYHEATKPMEPELVSSAVPSV 720
Score = 169 bits (427), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 169/298 (56%), Gaps = 22/298 (7%)
Query: 14 SRPDEWDVVLKVKYGETLKRFGGYVQGPQFSLNLSALRSKIASAFKFGSDVDFILTYTXX 73
+R E D+V+KVK+G TLKRF +V GP F LNL+ALRSKIASAFKF D +F+LTYT
Sbjct: 11 AREGERDLVVKVKFGGTLKRFTAFVNGPHFDLNLAALRSKIASAFKFNPDTEFVLTYTDE 70
Query: 74 XXXXXXXXXXXXXXXAAIHQKLNPLRINVQLNNSHTAAPQAKQQDSDNIPLRSTTTEDPL 133
AAI Q+LNPLRINV+L +S Q KQQ D+I + ST ED L
Sbjct: 71 DGDVVILDDDSDLCDAAISQRLNPLRINVELKSSSDGVHQTKQQVLDSISVMSTALEDQL 130
Query: 134 AHIKSVIDEVLKPISMKSIQEPVPETLAKLSHEVLEAA---SPQLAELIKPFVKLVTP-S 189
A +K IDE L K + E VP LAK+SH++ A +P LA+L+ KL+ P S
Sbjct: 131 AQVKLAIDEAL-----KFVPEQVPTVLAKISHDLRSKAASSAPSLADLLDRLAKLMAPKS 185
Query: 190 NNNPSNGHADGSCSSSTGLPQTQVDPKTNDEPKIDTSLGSQPLDTQNSKSSGARGLKTLS 249
S+G ADGS SS+G QT ++ ++ S PLD NS S+ + GLK +
Sbjct: 186 KMQSSSGSADGSSGSSSGRGQTLGSLNIKNDTELMAVSASNPLDMHNSGSTKSLGLKGVL 245
Query: 250 VEAPATSGVKSSQGQQASLYPSIEELLFSPFLPNSGDDKSASKGISDAQSKGKSVMTS 307
++ +K +Q + S YP + L SG K +KG ++AQSKGKSV +S
Sbjct: 246 LD-----DIK-AQAEHVSGYPYYVDTL-------SGWVKVDNKGSTNAQSKGKSVTSS 290
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 39/45 (86%)
Query: 769 MGFRQVDLNKEILRQNKYNLEQSVDDLCGVSEWDPLLEELQEMGF 813
MGF QVDLNKEI+R+N+YNLEQS+D+LCG+ EWD L +EL E+G
Sbjct: 837 MGFGQVDLNKEIIRRNEYNLEQSIDELCGILEWDALHDELHELGI 881
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 27,144,514
Number of extensions: 1123684
Number of successful extensions: 2545
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2533
Number of HSP's successfully gapped: 4
Length of query: 845
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 736
Effective length of database: 11,344,475
Effective search space: 8349533600
Effective search space used: 8349533600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)