Os04g0476800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TA5 protein (Fragment).
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Os04g0476800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TA5 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.13 | 0.298 | 11.3 | 2.39 | 1.58 | -0.221 | -0.574 | -2.73 | 0.54 | 5.31 | 19.3 | 4445 | -- | -- |
| 43.04 | 0.306 | 11.4 | 2.19 | 1.57 | 0.657 | -0.777 | -- | 0.471 | 5.29 | 14.3 | 26152 | -- | -- |
| 40.9 | 0.298 | 11.3 | 2.4 | 1.58 | -0.217 | -- | -2.74 | 0.542 | 5.35 | 19.23 | 4556 | -- | -- |
| 43.04 | 0.306 | 11.4 | 2.32 | 1.59 | 0.716 | -- | -- | 0.499 | 5.35 | 13.99 | 26133 | -- | -- |
| 168.34 | 0.608 | 11.4 | 2.15 | -- | 0.455 | -- | -0.89 | 0.513 | -- | 19.4 | 6074 | -- | -- |
| 51.53 | 0.337 | 11.4 | 1.84 | 1.58 | -- | -0.484 | -- | 0.368 | 5.31 | -- | -- | -- | -- |
| 52.1 | 0.338 | 11.4 | 1.84 | 1.58 | -- | -- | -- | 0.37 | 5.35 | -- | -- | -- | -- |
| 171.36 | 0.612 | 11.4 | 2.06 | -- | 0.563 | -- | -- | 0.49 | -- | 19.4 | 6074 | -- | -- |
| 67.4 | 0.382 | 11.6 | -- | 1.57 | -1.26 | -- | -- | -0.275 | 5.41 | 22.06 | 47520 | -- | -- |
| 181.76 | 0.63 | 11.5 | 1.9 | -- | -- | -- | -- | 0.409 | -- | -- | -- | -- | -- |
| 141.73 | 0.557 | 11.5 | -- | 1.61 | -- | -- | -- | 0.165 | 5.3 | -- | -- | -- | -- |
| 194.82 | 0.65 | 11.6 | -- | -- | -1.32 | -- | -- | -0.321 | -- | 26.27 | 47520 | -- | -- |
| 276.78 | 0.777 | 11.5 | -- | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.95 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 4 | 38.06 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 6 | 38.08 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 8 | 38.10 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 14 |
| 10 | 38.17 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 12 | 38.20 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 23 | 2 |
| 13 | 38.21 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 22 | 5 |
| 18 | 38.23 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 29 | 38.28 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 32 | 38.29 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 47 | 38.31 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 71 | 38.32 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 12 | 8 |
| 81 | 38.33 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 103 | 38.34 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 104 | 38.34 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 17 | NA |
| 118 | 38.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 120 | 38.35 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 16 | 9 |
| 216 | 38.38 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 248 | 38.39 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 15 | NA |
| 280 | 38.40 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 312 | 38.41 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 315 | 38.41 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 11 | NA |
| 407 | 38.43 | atmosphere | 1010 | 43200 | > th | dose dependent | no | NA | NA |
| 431 | 38.43 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 15 | 22 |
| 441 | 38.43 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 460 | 38.44 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 504 | 38.45 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 17 |
| 532 | 38.46 | humidity | 90 | 14400 | < th | dose independent | sin | 10 | NA |
| 622 | 38.48 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 15 | NA |
| 828 | 38.53 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 848 | 38.53 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 993 | 38.57 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 9 |