BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0476800 Os04g0476800|AK070908
(881 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G24690.1 | chr4:12741191-12744202 FORWARD LENGTH=705 209 6e-54
>AT4G24690.1 | chr4:12741191-12744202 FORWARD LENGTH=705
Length = 704
Score = 209 bits (532), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 131/225 (58%), Gaps = 20/225 (8%)
Query: 458 TLHRWIQCDGCGVTPIAGSRYKSNIKDDYDLCNTCFSRMGNVNEYTRIDRPSFGSRRCRD 517
H+ I+CDGCGV PI G R+KS +K+DYDLC C+S MGN +YTR+D+P +
Sbjct: 284 VFHKGIRCDGCGVLPITGPRFKSKVKEDYDLCTICYSVMGNEGDYTRMDKP-VSVQHLHP 342
Query: 518 LNQNQMLFPH-------------------LRQLHDCRFIKDVTVPDGTVMAPSTPFTKIW 558
FP+ R D RF+ DV V DGTV+APS PFTKIW
Sbjct: 343 FRGPFTQFPNPWLSHPVPRATNGGAPLRCTRPKLDSRFVLDVNVIDGTVVAPSAPFTKIW 402
Query: 559 RIHNNGSSMWPYGTCLTWVGGHLFARNSSVKLGISVDGFPIDQEIDVGVDFVTPAKPGGY 618
++ N+GS +WP GT + W+GG F + SV L I +G PI E+DV VDFV P PG Y
Sbjct: 403 KMRNSGSLVWPQGTQIVWIGGDRFCNSLSVDLQIPKEGVPIYSELDVKVDFVAPELPGRY 462
Query: 619 VSYWRLASPTGQMFGQRVWVFIQVEHPVKTSSNKQSAAINLNMPP 663
+SYWR+A+ G FGQRVWV I V+ +K S + +NLN P
Sbjct: 463 ISYWRMATSDGAKFGQRVWVLIHVDASLKNSVVNEFHGLNLNASP 507
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 45/56 (80%)
Query: 826 VEDNMLRELGQMGFGQVDLNKEIIRRNEYNLEQSIDELCGILEWDALHDELHELGI 881
VE ML+EL +MGF ++DLNKEI+R NEYNLEQS+D LCG+ EWD + +EL E+G
Sbjct: 618 VEITMLKELEEMGFKEIDLNKEILRDNEYNLEQSVDALCGVSEWDPILEELQEMGF 673
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 18 LVVKVKFGGTLKRFTAFV--NGPHFDLNLAALRSKIASAFKFNPDTEFVLTYTXXXXXXX 75
LVVKV +GG L+RF V NG DL +A L+ KIA+ F + D E LTY+
Sbjct: 8 LVVKVSYGGVLRRFRVPVKANG-QLDLEMAGLKEKIAALFNLSADAELSLTYS-DEDGDV 65
Query: 76 XXXXXXXXXXXXXXQRLNPLRINVELKSSSDGVHQTKQQVLDSISVMSTALEDQLAQVKL 135
QRL L+INV + GV S S + + +++++
Sbjct: 66 VALVDDNDLFDVTNQRLKFLKINV-----NAGVSTNSAAPESSGSSTPAGMPNPVSKIQK 120
Query: 136 AIDEALKFVPEQVPTVLAKISHD 158
I++ L VP + ++K+ D
Sbjct: 121 GINDVLMAVPNPMRDTISKVYMD 143
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,913,540
Number of extensions: 742663
Number of successful extensions: 1933
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1933
Number of HSP's successfully gapped: 3
Length of query: 881
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 774
Effective length of database: 8,173,057
Effective search space: 6325946118
Effective search space used: 6325946118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)