BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0459800 Os04g0459800|AK105401
(609 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0459800 Helicase, C-terminal domain containing protein 1165 0.0
Os03g0746500 Similar to RNA helicase like protein 404 e-112
AK109970 320 2e-87
>Os04g0459800 Helicase, C-terminal domain containing protein
Length = 609
Score = 1165 bits (3014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/599 (93%), Positives = 561/599 (93%)
Query: 11 LLRRSTSSQHHRRIXXXXXXXXXXXXXXXFAEFCVTHLADELRKHESVMAAADLTAPHAW 70
LLRRSTSSQHHRRI FAEFCVTHLADELRKHESVMAAADLTAPHAW
Sbjct: 11 LLRRSTSSQHHRRILLLPADDAHALLLPAFAEFCVTHLADELRKHESVMAAADLTAPHAW 70
Query: 71 YPFARAMRRRVVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFDKVNALGVYC 130
YPFARAMRRRVVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFDKVNALGVYC
Sbjct: 71 YPFARAMRRRVVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFDKVNALGVYC 130
Query: 131 SLRTGQEIKEVPFSNHVACTIEMLSTEEPYEVAVVDEIQMMADPVRGYAWTRAVLGLKAD 190
SLRTGQEIKEVPFSNHVACTIEMLSTEEPYEVAVVDEIQMMADPVRGYAWTRAVLGLKAD
Sbjct: 131 SLRTGQEIKEVPFSNHVACTIEMLSTEEPYEVAVVDEIQMMADPVRGYAWTRAVLGLKAD 190
Query: 191 EIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVRSGDCIVAFS 250
EIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVRSGDCIVAFS
Sbjct: 191 EIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVRSGDCIVAFS 250
Query: 251 RREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVASDAVGMGLNL 310
RREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVASDAVGMGLNL
Sbjct: 251 RREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVASDAVGMGLNL 310
Query: 311 NIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIYPDGXXXXXXXXXXXXXIQCL 370
NIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIYPDG IQCL
Sbjct: 311 NIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIYPDGLTTTFLLDDLDYLIQCL 370
Query: 371 QQPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLDKFRENCRVDSTYFMCHQESIKKVA 430
QQPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLDKFRENCRVDSTYFMCHQESIKKVA
Sbjct: 371 QQPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLDKFRENCRVDSTYFMCHQESIKKVA 430
Query: 431 NMLERIQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSQSRRVSIAMGMPKGSAKND 490
NMLERIQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSQSRRVSIAMGMPKGSAKND
Sbjct: 431 NMLERIQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSQSRRVSIAMGMPKGSAKND 490
Query: 491 TELLDLETKHQVLSMYLWLSHHFEEDHFPHVQKAEEMSINIADXXXXXXXXXXWKPTSRQ 550
TELLDLETKHQVLSMYLWLSHHFEEDHFPHVQKAEEMSINIAD WKPTSRQ
Sbjct: 491 TELLDLETKHQVLSMYLWLSHHFEEDHFPHVQKAEEMSINIADLLAKSLAKASWKPTSRQ 550
Query: 551 QAKPRRENEEDNDVEQASDDNAKNDSEDGYERSISRIKPFMRKRLDRPSQDPSSLNFVA 609
QAKPRRENEEDNDVEQASDDNAKNDSEDGYERSISRIKPFMRKRLDRPSQDPSSLNFVA
Sbjct: 551 QAKPRRENEEDNDVEQASDDNAKNDSEDGYERSISRIKPFMRKRLDRPSQDPSSLNFVA 609
>Os03g0746500 Similar to RNA helicase like protein
Length = 579
Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/504 (41%), Positives = 306/504 (60%), Gaps = 8/504 (1%)
Query: 62 ADLTAPHAWYPFARAMRRRVVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFD 121
DLT PH WYP AR +R V H GPTNSGKTHNAL R A+ SGVYC PLRLLA EV
Sbjct: 61 TDLTHPHIWYPNAREKKRNVFLHVGPTNSGKTHNALKRLEASSSGVYCGPLRLLAREVAQ 120
Query: 122 KVNALGVYCSLRTGQEIKEVPFSNHVACTIEMLSTEEPYEVAVVDEIQMMADPVRGYAWT 181
++N V C+L TGQE +E+ + H + T+EM Y+ AV+DEIQM+ RG+++T
Sbjct: 121 RLNKANVPCNLITGQEREEIEGAKHSSVTVEMADMTTEYQCAVIDEIQMVGCRSRGFSFT 180
Query: 182 RAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVR 241
RA+LGL +DE+H+CGDP+V+ ++++I TGD + V YER PL V KT LG N++
Sbjct: 181 RALLGLCSDELHVCGDPAVVPLIQRILEPTGDVVTVQYYERLSPL-VPLKTTLGSFSNIK 239
Query: 242 SGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVAS 301
+GDC+V FSRR I+ +K IE KH C V+YG+LPPETR +QA +FN+QD+ +VLVAS
Sbjct: 240 AGDCVVTFSRRSIYMLKRRIEMGGKHLCSVVYGSLPPETRTKQATMFNDQDSNLNVLVAS 299
Query: 302 DAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIYPDGXXXXXXXX 361
DA+GMGLNLNI R++F +L K++G + +++KQIAGRAGR GS +P G
Sbjct: 300 DAIGMGLNLNISRIIFSTLEKFDGICNRELTVAEIKQIAGRAGRYGSKFPVGEVTCLNSD 359
Query: 362 XXXXXIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLDKFRENCRVDSTYFMC 421
L+ P ++ GLFP F+ + ++ F +L++F + ++ YF+
Sbjct: 360 HLPLLHSALKSPSPIIERAGLFPTFDVLSLYSRLHGTDFFQPILERFLDKAKLSPDYFIA 419
Query: 422 HQESIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSQSRRVSIAMG 481
E + KVA +++ + L L D+Y FC +PV+IRD + L++FA NY++ V +
Sbjct: 420 DCEDMLKVAAIVDELP-LGLYDKYLFCLSPVDIRDDISTKGLIQFAENYAKKGIVRLKEI 478
Query: 482 MPKGS---AKNDTELLDLETKHQVLSMYLWLSHHFEEDHFPHVQKAEEMSINIADXXXXX 538
G+ K+ +L +LE+ H+VL +Y+WLS ED +P + A +
Sbjct: 479 FTPGTLQVPKSHNQLKELESIHKVLELYVWLSFRL-EDSYPDRELAASQKSICSMLIEEY 537
Query: 539 XXXXXWKPTSRQQ--AKPRRENEE 560
W+ R+ KP+R ++E
Sbjct: 538 LERSGWQQNGRKDFLQKPKRLHQE 561
>AK109970
Length = 869
Score = 320 bits (820), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 183/450 (40%), Positives = 250/450 (55%), Gaps = 32/450 (7%)
Query: 63 DLTAPHAWYPFARAMRRRVVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFDK 122
DL P YP AR M R + H GPTNSGKTH AL + A++GV+ PLRLLA EV+D+
Sbjct: 291 DLRLPAHQYPRARTMLRSIHLHVGPTNSGKTHGALVALSKARTGVFAGPLRLLAHEVWDR 350
Query: 123 VNALGV-------YCSLRTGQEIKEV-PFSNHVACTIEMLSTEEPYEVAVVDEIQMMADP 174
N + C+L TG+E + V + V+CT+EM+ST +V V+DEIQM+ DP
Sbjct: 351 FNTGTISPGVAPRACNLVTGEEQRTVDALAGLVSCTVEMVSTSSSVDVGVIDEIQMIGDP 410
Query: 175 VRGYAWTRAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKTLL 234
RG+AWT AVLGL A E+HLCG+ SV+ ++ K+ GD L +H+YER PL V ++L
Sbjct: 411 QRGFAWTAAVLGLPAKELHLCGEASVIPLIEKLAEACGDHLTIHRYERLTPLSVADESLH 470
Query: 235 GDLKNVRSGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNE 294
DL + GDCIVAFSR IF +K IE+ T +C V YGALPPET+ +QAKLFNE +
Sbjct: 471 NDLAQIERGDCIVAFSRSGIFALKREIEQKTGLRCAVAYGALPPETKAEQAKLFNE--GK 528
Query: 295 YDVLVASDAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRRG----SIY 350
DV+VASDA+GMGLNL I+RVVF +L K+NG V ++ASQ+KQIAGRAGR G S
Sbjct: 529 LDVMVASDAIGMGLNLRIKRVVFDTLTKWNGSEEVTLSASQIKQIAGRAGRYGTQSASTK 588
Query: 351 P---DGXXXXXXXXXXXXXIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDL-------T 400
P G L P + + P E + + P
Sbjct: 589 PADLGGIVTTRHEHELEVLRAALASPLRPITRAAIRPAREALSQLSAMLPSAKPGGGLRA 648
Query: 401 FNELLDKFRENCRVDST-YFMCHQESIKKVANMLERIQG--LSLKDRYNFCFAPVNIRDP 457
++L R+++ YF+ ++ ++E L++ +R F AP N+RD
Sbjct: 649 LSQLYADVALLARIEAAHYFVADFSQQLAISPLVESASAGMLTVAERETFSNAPANMRDE 708
Query: 458 KAMYHLLRFATNYSQSRRVSI-----AMGM 482
+ + L +S+ V A+GM
Sbjct: 709 RVVAFLTSAVAQFSRGGLVRFDQAADALGM 738
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,432,580
Number of extensions: 723833
Number of successful extensions: 2345
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2336
Number of HSP's successfully gapped: 3
Length of query: 609
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 502
Effective length of database: 11,448,903
Effective search space: 5747349306
Effective search space used: 5747349306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)