Os03g0746500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA helicase like protein.
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Os03g0746500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RNA helicase like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.46 | 0.403 | 6.28 | -1.66 | 0.696 | -0.462 | 0.746 | 0.233 | -0.488 | 21.5 | 19.86 | 17 | -- | -- |
| 73.59 | 0.4 | 6.28 | -1.66 | 0.7 | -0.473 | 0.918 | -- | -0.49 | 21.5 | 19.94 | 19 | -- | -- |
| 74.68 | 0.402 | 6.28 | -1.68 | 0.695 | -0.444 | -- | 0.665 | -0.488 | 21.4 | 19.22 | 17 | -- | -- |
| 76.72 | 0.408 | 6.28 | -1.7 | 0.677 | -0.441 | -- | -- | -0.489 | 21.3 | 19.86 | 19 | -- | -- |
| 93.38 | 0.453 | 6.27 | -1.67 | -- | -0.0899 | -- | 0.74 | -0.492 | -- | 19.22 | 17 | -- | -- |
| 82.29 | 0.425 | 6.28 | -1.68 | 0.484 | -- | 0.795 | -- | -0.493 | 19.8 | -- | -- | -- | -- |
| 83.86 | 0.429 | 6.28 | -1.7 | 0.494 | -- | -- | -- | -0.49 | 19.3 | -- | -- | -- | -- |
| 93.97 | 0.451 | 6.27 | -1.72 | -- | -0.26 | -- | -- | -0.509 | -- | 30 | 52 | -- | -- |
| 154.72 | 0.579 | 6.28 | -- | 0.673 | -0.445 | -- | -- | -0.429 | 21.6 | 19.87 | 20 | -- | -- |
| 96.84 | 0.46 | 6.27 | -1.71 | -- | -- | -- | -- | -0.499 | -- | -- | -- | -- | -- |
| 159.89 | 0.591 | 6.24 | -- | 0.511 | -- | -- | -- | -0.301 | 19.1 | -- | -- | -- | -- |
| 166.65 | 0.601 | 6.23 | -- | -- | -0.776 | -- | -- | -0.32 | -- | 50 | 162 | -- | -- |
| 173.68 | 0.615 | 6.22 | -- | -- | -- | -- | -- | -0.309 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.89 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 8 | 69.86 | temperature | 20 | 720 | > th | dose dependent | sin | 12 | NA |
| 9 | 69.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 8 |
| 34 | 70.59 | temperature | 15 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 37 | 70.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 10 |
| 49 | 70.91 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 69 | 71.14 | radiation | 40 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 70 | 71.14 | radiation | 40 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 79 | 71.18 | radiation | 40 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 84 | 71.21 | radiation | 40 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 85 | 71.21 | radiation | 40 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 90 | 71.24 | radiation | 40 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 100 | 71.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 116 | 71.35 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 138 | 71.43 | humidity | 90 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 143 | 71.45 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 182 | 71.53 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 194 | 71.56 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 216 | 71.60 | temperature | 20 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 221 | 71.61 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 224 | 71.62 | temperature | 20 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 237 | 71.63 | temperature | 20 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 242 | 71.64 | temperature | 20 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 243 | 71.64 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 252 | 71.65 | temperature | 15 | 43200 | > th | dose independent | sin | 6 | NA |
| 254 | 71.65 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 255 | 71.65 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 307 | 71.71 | temperature | 15 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 314 | 71.72 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 329 | 71.73 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 332 | 71.73 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 7 |
| 336 | 71.74 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 357 | 71.76 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 365 | 71.76 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 393 | 71.80 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 394 | 71.80 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 395 | 71.80 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 410 | 71.81 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 424 | 71.82 | temperature | 15 | 43200 | < th | dose independent | sin | 7 | NA |
| 433 | 71.83 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 472 | 71.85 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 478 | 71.85 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 482 | 71.86 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 12 |
| 487 | 71.86 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 502 | 71.87 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 508 | 71.88 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 543 | 71.89 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 558 | 71.90 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 565 | 71.91 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 577 | 71.91 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 581 | 71.91 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 16 | 7 |
| 594 | 71.92 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 609 | 71.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 8 |
| 614 | 71.93 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 617 | 71.93 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 630 | 71.94 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 673 | 71.96 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 730 | 71.97 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 15 |
| 739 | 71.99 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 779 | 72.00 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 807 | 72.01 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 850 | 72.03 | humidity | 90 | 43200 | > th | dose dependent | sin | 1 | NA |
| 864 | 72.04 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 899 | 72.05 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 900 | 72.05 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 916 | 72.05 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 22 |
| 992 | 72.08 | humidity | 90 | 43200 | < th | dose independent | sin | 2 | NA |