BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0746500 Os03g0746500|AK101069
(579 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0746500 Similar to RNA helicase like protein 1162 0.0
Os04g0459800 Helicase, C-terminal domain containing protein 419 e-117
AK109970 315 8e-86
>Os03g0746500 Similar to RNA helicase like protein
Length = 579
Score = 1162 bits (3005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/558 (100%), Positives = 558/558 (100%)
Query: 22 WLHDTSSCYICSISGTHSLVNHPNLRLQRGYHNSGKFDLTDLTHPHIWYPNAREKKRNVF 81
WLHDTSSCYICSISGTHSLVNHPNLRLQRGYHNSGKFDLTDLTHPHIWYPNAREKKRNVF
Sbjct: 22 WLHDTSSCYICSISGTHSLVNHPNLRLQRGYHNSGKFDLTDLTHPHIWYPNAREKKRNVF 81
Query: 82 LHVGPTNSGKTHNALKRLEASSSGVYCGPLRLLAREVAQRLNKANVPCNLITGQEREEIE 141
LHVGPTNSGKTHNALKRLEASSSGVYCGPLRLLAREVAQRLNKANVPCNLITGQEREEIE
Sbjct: 82 LHVGPTNSGKTHNALKRLEASSSGVYCGPLRLLAREVAQRLNKANVPCNLITGQEREEIE 141
Query: 142 GAKHSSVTVEMADMTTEYQCAVIDEIQMVGCRSRGFSFTRALLGLCSDELHVCGDPAVVP 201
GAKHSSVTVEMADMTTEYQCAVIDEIQMVGCRSRGFSFTRALLGLCSDELHVCGDPAVVP
Sbjct: 142 GAKHSSVTVEMADMTTEYQCAVIDEIQMVGCRSRGFSFTRALLGLCSDELHVCGDPAVVP 201
Query: 202 LIQRILEPTGDVVTVQYYERLSPLVPLKTTLGSFSNIKAGDCVVTFSRRSIYMLKRRIEM 261
LIQRILEPTGDVVTVQYYERLSPLVPLKTTLGSFSNIKAGDCVVTFSRRSIYMLKRRIEM
Sbjct: 202 LIQRILEPTGDVVTVQYYERLSPLVPLKTTLGSFSNIKAGDCVVTFSRRSIYMLKRRIEM 261
Query: 262 GGKHLCSVVYGSLPPETRTKQATMFNDQDSNLNVLVASDAIGMGLNLNISRIIFSTLEKF 321
GGKHLCSVVYGSLPPETRTKQATMFNDQDSNLNVLVASDAIGMGLNLNISRIIFSTLEKF
Sbjct: 262 GGKHLCSVVYGSLPPETRTKQATMFNDQDSNLNVLVASDAIGMGLNLNISRIIFSTLEKF 321
Query: 322 DGICNRELTVAEIKQIAGRAGRYGSKFPVGEVTCLNSDHLPLLHSALKSPSPIIERAGLF 381
DGICNRELTVAEIKQIAGRAGRYGSKFPVGEVTCLNSDHLPLLHSALKSPSPIIERAGLF
Sbjct: 322 DGICNRELTVAEIKQIAGRAGRYGSKFPVGEVTCLNSDHLPLLHSALKSPSPIIERAGLF 381
Query: 382 PTFDVLSLYSRLHGTDFFQPILERFLDKAKLSPDYFIADCEDMLKVAAIVDELPLGLYDK 441
PTFDVLSLYSRLHGTDFFQPILERFLDKAKLSPDYFIADCEDMLKVAAIVDELPLGLYDK
Sbjct: 382 PTFDVLSLYSRLHGTDFFQPILERFLDKAKLSPDYFIADCEDMLKVAAIVDELPLGLYDK 441
Query: 442 YLFCLSPVDIRDDISTKGLIQFAENYAKKGIVRLKEIFTPGTLQVPKSHNQLKELESIHK 501
YLFCLSPVDIRDDISTKGLIQFAENYAKKGIVRLKEIFTPGTLQVPKSHNQLKELESIHK
Sbjct: 442 YLFCLSPVDIRDDISTKGLIQFAENYAKKGIVRLKEIFTPGTLQVPKSHNQLKELESIHK 501
Query: 502 VLELYVWLSFRLEDSYPDRELAASQKSICSMLIEEYLERSGWQQNGRKDFLQKPKRLHQE 561
VLELYVWLSFRLEDSYPDRELAASQKSICSMLIEEYLERSGWQQNGRKDFLQKPKRLHQE
Sbjct: 502 VLELYVWLSFRLEDSYPDRELAASQKSICSMLIEEYLERSGWQQNGRKDFLQKPKRLHQE 561
Query: 562 YDASQLRKYFQEIDVRSK 579
YDASQLRKYFQEIDVRSK
Sbjct: 562 YDASQLRKYFQEIDVRSK 579
>Os04g0459800 Helicase, C-terminal domain containing protein
Length = 609
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/504 (43%), Positives = 316/504 (62%), Gaps = 8/504 (1%)
Query: 61 TDLTHPHIWYPNAREKKRNVFLHVGPTNSGKTHNALKRLEASSSGVYCGPLRLLAREVAQ 120
DLT PH WYP AR +R V H GPTNSGKTHNAL R A+ SGVYC PLRLLA EV
Sbjct: 62 ADLTAPHAWYPFARAMRRRVVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFD 121
Query: 121 RLNKANVPCNLITGQEREEIEGAKHSSVTVEMADMTTEYQCAVIDEIQMVGCRSRGFSFT 180
++N V C+L TGQE +E+ + H + T+EM Y+ AV+DEIQM+ RG+++T
Sbjct: 122 KVNALGVYCSLRTGQEIKEVPFSNHVACTIEMLSTEEPYEVAVVDEIQMMADPVRGYAWT 181
Query: 181 RALLGLCSDELHVCGDPAVVPLIQRILEPTGDVVTVQYYERLSPL-VPLKTTLGSFSNIK 239
RA+LGL +DE+H+CGDP+V+ ++++I TGD + V YER PL V KT LG N++
Sbjct: 182 RAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVR 241
Query: 240 AGDCVVTFSRRSIYMLKRRIEMGGKHLCSVVYGSLPPETRTKQATMFNDQDSNLNVLVAS 299
+GDC+V FSRR I+ +K IE KH C V+YG+LPPETR +QA +FN+QD+ +VLVAS
Sbjct: 242 SGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVAS 301
Query: 300 DAIGMGLNLNISRIIFSTLEKFDGICNRELTVAEIKQIAGRAGRYGSKFPVGEVTCLNSD 359
DA+GMGLNLNI R++F +L K++G + +++KQIAGRAGR GS +P G T D
Sbjct: 302 DAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIYPDGLTTTFLLD 361
Query: 360 HLPLLHSALKSPSPIIERAGLFPTFDVLSLYSRLHGTDFFQPILERFLDKAKLSPDYFIA 419
L L L+ P ++ GLFP F+ + ++ F +L++F + ++ YF+
Sbjct: 362 DLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLDKFRENCRVDSTYFMC 421
Query: 420 DCEDMLKVAAIVDELP-LGLYDKYLFCLSPVDIRDDISTKGLIQFAENYAKKGIVRLKEI 478
E + KVA +++ + L L D+Y FC +PV+IRD + L++FA NY++ V +
Sbjct: 422 HQESIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSQSRRVSIAMG 481
Query: 479 FTPGTLQVPKSHNQLKELESIHKVLELYVWLSFRL-EDSYPDRELAASQKSICSMLIEEY 537
G+ K+ +L +LE+ H+VL +Y+WLS ED +P + A + L+ +
Sbjct: 482 MPKGS---AKNDTELLDLETKHQVLSMYLWLSHHFEEDHFPHVQKAEEMSINIADLLAKS 538
Query: 538 LERSGWQQNGRKDFLQKPKRLHQE 561
L ++ W+ R+ KP+R ++E
Sbjct: 539 LAKASWKPTSRQQ--AKPRRENEE 560
>AK109970
Length = 869
Score = 315 bits (806), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 199/559 (35%), Positives = 290/559 (51%), Gaps = 83/559 (14%)
Query: 62 DLTHPHIWYPNAREKKRNVFLHVGPTNSGKTHNALKRLEASSSGVYCGPLRLLAREVAQR 121
DL P YP AR R++ LHVGPTNSGKTH AL L + +GV+ GPLRLLA EV R
Sbjct: 291 DLRLPAHQYPRARTMLRSIHLHVGPTNSGKTHGALVALSKARTGVFAGPLRLLAHEVWDR 350
Query: 122 LNKANV-------PCNLITGQEREEIEG-AKHSSVTVEMADMTTEYQCAVIDEIQMVGCR 173
N + CNL+TG+E+ ++ A S TVEM ++ VIDEIQM+G
Sbjct: 351 FNTGTISPGVAPRACNLVTGEEQRTVDALAGLVSCTVEMVSTSSSVDVGVIDEIQMIGDP 410
Query: 174 SRGFSFTRALLGLCSDELHVCGDPAVVPLIQRILEPTGDVVTVQYYERLSPLVPLKTTL- 232
RGF++T A+LGL + ELH+CG+ +V+PLI+++ E GD +T+ YERL+PL +L
Sbjct: 411 QRGFAWTAAVLGLPAKELHLCGEASVIPLIEKLAEACGDHLTIHRYERLTPLSVADESLH 470
Query: 233 GSFSNIKAGDCVVTFSRRSIYMLKRRIEMGGKHLCSVVYGSLPPETRTKQATMFNDQDSN 292
+ I+ GDC+V FSR I+ LKR IE C+V YG+LPPET+ +QA +FN +
Sbjct: 471 NDLAQIERGDCIVAFSRSGIFALKREIEQKTGLRCAVAYGALPPETKAEQAKLFN--EGK 528
Query: 293 LNVLVASDAIGMGLNLNISRIIFSTLEKFDGICNRELTVAEIKQIAGRAGRYGSKFPV-- 350
L+V+VASDAIGMGLNL I R++F TL K++G L+ ++IKQIAGRAGRYG++
Sbjct: 529 LDVMVASDAIGMGLNLRIKRVVFDTLTKWNGSEEVTLSASQIKQIAGRAGRYGTQSASTK 588
Query: 351 -----GEVTCLNSDHLPLLHSALKSPSPIIERAGLFPTFDVLSLYSRLHGT----DFFQP 401
G VT + L +L +AL SP I RA + P + LS S + + +
Sbjct: 589 PADLGGIVTTRHEHELEVLRAALASPLRPITRAAIRPAREALSQLSAMLPSAKPGGGLRA 648
Query: 402 ILERFLDKAKL----SPDYFIADCEDMLKVAAIVDELPLGLY---DKYLFCLSPVDIRDD 454
+ + + D A L + YF+AD L ++ +V+ G+ ++ F +P ++RD+
Sbjct: 649 LSQLYADVALLARIEAAHYFVADFSQQLAISPLVESASAGMLTVAERETFSNAPANMRDE 708
Query: 455 ISTKGLIQFAENYAKKGIVRLKEIFTP-GTLQVPKSHNQLKE------------------ 495
L +++ G+VR + G L+V + +L E
Sbjct: 709 RVVAFLTSAVAQFSRGGLVRFDQAADALGMLEVEEQLVELMEQATEARRRATESANSTTP 768
Query: 496 -----------------------------------LESIHKVLELYVWLSFRLEDSYPDR 520
+ES+H+ LY+WLSFR ++ R
Sbjct: 769 HSDPLPLVAYLGHNSGAGGGGSGAHPLINIATLLVVESLHRCFTLYLWLSFRFPLAFCYR 828
Query: 521 ELAASQKSICSMLIEEYLE 539
+K + I+ LE
Sbjct: 829 AEVDRRKKRAEIAIDFVLE 847
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,080,561
Number of extensions: 815457
Number of successful extensions: 1599
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1591
Number of HSP's successfully gapped: 3
Length of query: 579
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 473
Effective length of database: 11,501,117
Effective search space: 5440028341
Effective search space used: 5440028341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)