Os04g0459800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Helicase, C-terminal domain containing protein.
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Os04g0459800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Helicase, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.38 | 0.281 | 8.87 | 0.703 | 0.232 | 0.896 | 0.16 | 1.19 | -0.0602 | 9.17 | 10 | 10 | -- | -- |
| 37.22 | 0.286 | 8.89 | 0.546 | 0.223 | 0.813 | 0.397 | -- | -0.0969 | 10 | 16.14 | 9 | -- | -- |
| 36.42 | 0.283 | 8.87 | 0.718 | 0.226 | 0.912 | -- | 1.28 | -0.0585 | 9 | 10 | 10 | -- | -- |
| 37.6 | 0.287 | 8.89 | 0.559 | 0.223 | 0.784 | -- | -- | -0.105 | 8.95 | 18.6 | 10 | -- | -- |
| 39.27 | 0.293 | 8.88 | 0.698 | -- | 0.986 | -- | 1.23 | -0.0688 | -- | 10 | 10 | -- | -- |
| 44.66 | 0.313 | 8.86 | 0.703 | 0.382 | -- | 0.558 | -- | 0.0224 | 12.2 | -- | -- | -- | -- |
| 45.99 | 0.318 | 8.86 | 0.724 | 0.381 | -- | -- | -- | 0.0245 | 12 | -- | -- | -- | -- |
| 40.38 | 0.297 | 8.9 | 0.546 | -- | 0.844 | -- | -- | -0.113 | -- | 18.48 | 4 | -- | -- |
| 44.87 | 0.312 | 8.91 | -- | 0.223 | 1.15 | -- | -- | -0.201 | 7.57 | 15.41 | 2 | -- | -- |
| 55.11 | 0.347 | 8.87 | 0.713 | -- | -- | -- | -- | 0.0193 | -- | -- | -- | -- | -- |
| 59.81 | 0.362 | 8.88 | -- | 0.371 | -- | -- | -- | -0.0561 | 11.8 | -- | -- | -- | -- |
| 47.54 | 0.321 | 8.92 | -- | -- | 1.12 | -- | -- | -0.193 | -- | 15.4 | 2 | -- | -- |
| 68.5 | 0.386 | 8.89 | -- | -- | -- | -- | -- | -0.0597 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 4 | 35.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 5 | 35.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 15 |
| 8 | 35.10 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 19 | 35.33 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 38 | 35.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 77 | 35.94 | temperature | 15 | 10 | > th | dose dependent | sin | 23 | NA |
| 157 | 36.38 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 182 | 36.44 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 183 | 36.44 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 248 | 36.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 255 | 36.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 256 | 36.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 9 |
| 320 | 36.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 9 |
| 330 | 36.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 360 | 36.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 371 | 36.94 | temperature | 30 | 10 | < th | dose dependent | sin | 23 | NA |
| 387 | 36.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 389 | 36.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 398 | 36.98 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 404 | 36.99 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 16 |
| 436 | 37.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 441 | 37.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 457 | 37.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 503 | 37.14 | temperature | 20 | 1440 | < th | dose independent | sin | 15 | NA |
| 531 | 37.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 555 | 37.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 570 | 37.23 | temperature | 30 | 270 | < th | dose independent | rect. | 23 | 20 |
| 581 | 37.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 608 | 37.27 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 676 | 37.35 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 699 | 37.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 728 | 37.43 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 729 | 37.44 | temperature | 20 | 720 | > th | dose independent | sin | 22 | NA |
| 771 | 37.49 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 16 |
| 792 | 37.51 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 17 |
| 822 | 37.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 842 | 37.56 | temperature | 20 | 720 | < th | dose independent | sin | 22 | NA |
| 871 | 37.58 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 902 | 37.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 3 |
| 947 | 37.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 16 |
| 999 | 37.68 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |